Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04586 ATGGCAGTTTCTGAATTAACCGCCGACGTGTTCCCATGGCTGAAATCCATGCCAGTGGCCCCGGAATACCGACCAACCGCCGCGGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAGAAAGAAGCATCTCAGTACGGAATCTGCAAAATCGTTCCACCGTTTCCACCGTCACCCAAGAAAACCGCCATAGCTAACCTCAACAGGTCACTGGTTAATTCCACATTCACCACACGTCAGCAGCAGATCGGGTTCTGTCCACGGAAGTCCCGACCCGTCAAACGACCCGTCTGGCAGAGTGGGGACCACTACACTTTCGCCGAGTTCGAAGCGAAAGCGAAATGGTTCGAGAAGAGTTACATGAAGAAGCATAACAAGGGTGGTGTTAGTGGCAATGCTCTTGAAACGGAGACGATGTTTTGGAAGGCTACTGTTGATAAACCGTTTTCAGTTGAGTATGCGAACGACATGCCTGGCTCTGCGTTTTCGGCGCAATGTAGGCATGCTGGTGAGGCTGCTTCGGTGGCTCATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCGAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCAGGGGTTACTTCGCCTATGGTTTATCTTGCTATGCTATTCAGCTGGTTTGCTTGGCATGTTGAGGATCATGATCTTCATAGCTTGAATTATCTTCATATGGGCGCTTCTAAGACGTGGTATGGTGTTCCTAGGGATGCTGCCGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTGGGTGAGAAAACCACAGTGATGTCACCAGAAGTGCTTGTCAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTGGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATAGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGAGGAATCAGTGCTGAACCACGGAGTTCTCGTCTTAAAGATAAAAAGAAGGGTGAAGGAGATTCTGTAGTCAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTACTTCATGTACTCGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGCGTCGGATGCCAGCAACAAAAAGTGAACCCTGAATTTTCCATTAATGTATGCAATTCCAAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTAAACAGAAATTGTGGAATTCTGCAAGAAAAAAATTTCCATTCCGTGAAAGACAAGTTTACTCTGTTGTGTGAAGGGAAGGGGATTTCCTCTTTTGATGCAAACGGTAACACATCCCCTTCAAGTACTAAGCAACTTCAAACAGGCAACAACTGTGAATCTAATCAAGGAGACGGGTTGTCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGCCTATTAAACTTTTCCTGTGTTGCTATTGTACGTCCTAGCGAGCTAGCAGCTAGATATCTTATGTCTGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGATTCTGGAGTACCTAACAATAAACTAACTGTTGCTCACGAAGATGCAAATATTCCTGAGCCAAATATGCATACAGGGTGGACAAAGACAAATACCCAAGAGGCTGTAAATACTGAAGGAGGAAATGACAATACAGCTCTTGCATTATTGGCTTCGGCATATGCAAATTCTTCCGACTCTGAGGAAGATGCAATTGACGATCATAAATTGAATGCGATAAACTCTACATCTGAAAGTTTCCCTTCTAATGTTCAGGCTTCCCATGCTAATCCCATGACTAGACATGATAAAGATGATATTCTTTCAGAGAGCACCAGTTACGAAGCACATATATCTGAGGTTAATTTGAATCGGCCTCAAGAACAATCATTTGCGGAACAGAATTATAAAGTTACTTCAGAGGCTGCATTTGAAAATACAAGGCCAGTGCCTTATTCCATTTCATATAGTTCCCAAGATGCTAATAATGCTGAAAAGTCTTTGTCGGCCGAAGCCATGGTTGCTGTCAATCATAAAAATGCTTTATTGATACCACAATGTGATGAAGACTCAACTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCATATAGTGCTCTTATGTCATCCAGATTATCCCAAGATAGAAGCTGAGGCAAAGTTGTGGGCAGAAGATTTGGGGATTGATTATTCATGGAAGAATATTGCCTACAGGCATGGCACCAAGGAAGATGAGGAGAGGATCCAAGCTGCTGTGGATAGTGAAGAAGCAATTCCCGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATCCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCATAGAACCAAAGGTCTATCAGAGAAGGACTGACAGGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATGCCCTTTTAGCAAAAATGGATTCTGAAGATGTTGAGGATGAGGAAATTTTACATAGATTGATATCGCCTGATGTGAAAATTGAAAGATCGGGTAGTACCCCCAAAACTGAAACTGCTAGTACAAAATCGGGTAGGAAAAGGAAAATGTTCTTAAACAAAGGACAGACCAGGAAAGGAAGTTTTGTTGAAAAAGATATGGTTTTGGAAAATTCCACTGAAGATAAATCAAATAAATCAAATCCTCGGGAAAGGAGGATTCTTAGAAGCAAGCAAGCTAAGGGTGTTGAGAAAGATGGTGCAGCTTTGCACAGGGATTTTTCTCCATATCGTCGTAGAAAACCAATGAGCAAACAAAAAAATTGCACTGAAAGTGATGTAGTTTCTGATGATCAATTTATTGACAATGATGTGGTTTCAGATGATGCAGTGGACTATGATTCAGATTGTCATCAGATGGGAGAACTTAGAAGCAGTCAAGTTGAAGATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGTTGCAAATAGAGACTTCTAGAAGCAAGCATGCCAACTTCATTAGTGAAGACGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAGCAACGCAAGAGAATTCCTAAAAGCAGGAAAGGAAATTCCCTTGCTGAAAAAGATTCAGTGACATCTGATGACCAACTGGAGCTGAACATCCAGAAACAGCGCAGGGGTAATTCTAGAAGTAGGAAACTCAAATACCTCCATGAAGATGATATATCGGATAACCAAACAAATATCTATTGTCGCAAGTACCAAAGAAGAACAGTTAAAGTCAGGCAAGCCAAATGTGTAGCAAGGGAAGATGTAATGTCTGACGATCAATTGGATGATCCCTATCAAAAGCAGAAACCAAGAATTTCTAGAAGGAAAAACAAAGGCATTAATAGAGAATTTAAAAATGAAGTGTCCGATGACCAACAAGATGGCCACTTTCAGAAGCAGCAGCGAAAAATTCCGAAGAGCAGGATGCACACCATACAGACTGATGAAGACGTTATCGATGACTCGGCTGATGACAATGCCTGTCTGCTGCATAGAACTTCTAAAAGGAAGAAAGCTAAATTCAAGGATGAAGATGATATGAGTTTAGATAATGAAATAGAAGATGATTCTCTTCCGCAGCACAAAACTCTTCCAAGTAAACAATCCAAACCAAAGACACTTAAACAGATGAAACAATCCAAATCTTTCTCGATGAAAAACCAGACACCTCGGCCAGTGAAACGAGGGGCTCAGATGCTGATGAAATCAAAGGCTGCTCAGCAAGTAAAGCAGCCTTCTCATTTGCGAAATAAACAATCTGGTAACTCCAGAGAGCCTAGTTTAGATTTGGAAGAGGAGGATGTAGGTGGACCTAGCACATGCCTTAGAAAGAGACTCCCAAAAGCTCAGGAGTCTGAAGTAAAATCAAAAGACAAACAAACCAAAAGGAAAAGAACAAAGGATGCTACAGCAGCTACTCATGTTTCAGCTCGCAATGCCAAAACAGAGAACGAGGAAGCAGAATATCAGTGTGACATCGAGGGATGCACCATGAGTTTTGAGTCAAAACAGGAGCTGCTGCAGCATAAGAAAAATATCTGTCCAGTAAAAGGTTGCGGGAAAAAGTTCTTTTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCGCTCAAGTGTCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATCCGAGTCCATACCGGTGCACGTCCTTATATATGTGCGGAACCAGGTTGTGCGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGGAAAACTGGTCATTTAACAAAGAAGAGTCGTCAATAA 4683 0.4245 MAVSELTADVFPWLKSMPVAPEYRPTAAEFEDPIGYIFKIEKEASQYGICKIVPPFPPSPKKTAIANLNRSLVNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFAEFEAKAKWFEKSYMKKHNKGGVSGNALETETMFWKATVDKPFSVEYANDMPGSAFSAQCRHAGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVNPEFSINVCNSKGMNSSKGFVSDDLVLNRNCGILQEKNFHSVKDKFTLLCEGKGISSFDANGNTSPSSTKQLQTGNNCESNQGDGLSDQRLFSCVTCGLLNFSCVAIVRPSELAARYLMSADCSFFNDWVVDSGVPNNKLTVAHEDANIPEPNMHTGWTKTNTQEAVNTEGGNDNTALALLASAYANSSDSEEDAIDDHKLNAINSTSESFPSNVQASHANPMTRHDKDDILSESTSYEAHISEVNLNRPQEQSFAEQNYKVTSEAAFENTRPVPYSISYSSQDANNAEKSLSAEAMVAVNHKNALLIPQCDEDSTRMHVFCLEHAVEAEQQLRPIGGAHIVLLCHPDYPKIEAEAKLWAEDLGIDYSWKNIAYRHGTKEDEERIQAAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNPVIYYAFGRSSPASSPIEPKVYQRRTDRQKKVVAGKWCGKVWMSNQVHALLAKMDSEDVEDEEILHRLISPDVKIERSGSTPKTETASTKSGRKRKMFLNKGQTRKGSFVEKDMVLENSTEDKSNKSNPRERRILRSKQAKGVEKDGAALHRDFSPYRRRKPMSKQKNCTESDVVSDDQFIDNDVVSDDAVDYDSDCHQMGELRSSQVEDTERDSISEDSLDVGSLQLQIETSRSKHANFISEDDAISDDQMENGCQKQRKRIPKSRKGNSLAEKDSVTSDDQLELNIQKQRRGNSRSRKLKYLHEDDISDNQTNIYCRKYQRRTVKVRQAKCVAREDVMSDDQLDDPYQKQKPRISRRKNKGINREFKNEVSDDQQDGHFQKQQRKIPKSRMHTIQTDEDVIDDSADDNACLLHRTSKRKKAKFKDEDDMSLDNEIEDDSLPQHKTLPSKQSKPKTLKQMKQSKSFSMKNQTPRPVKRGAQMLMKSKAAQQVKQPSHLRNKQSGNSREPSLDLEEEDVGGPSTCLRKRLPKAQESEVKSKDKQTKRKRTKDATAATHVSARNAKTENEEAEYQCDIEGCTMSFESKQELLQHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYICAEPGCAQTFRFVSDFSRHKRKTGHLTKKSRQ 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04586 1560 SMART cupin_9 175 344 IPR003347 -
Vivi3g04586 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1499 1521 IPR013087 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1213 1265 - -
Vivi3g04586 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1198 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1380 1394 - -
Vivi3g04586 1560 Gene3D Cupin 13 348 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 651 670 - -
Vivi3g04586 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1469 1491 IPR013087 -
Vivi3g04586 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1467 1496 IPR013087 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 977 1021 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1305 1429 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1138 1152 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1359 1379 - -
Vivi3g04586 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1483 1525 IPR036236 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1112 1154 - -
Vivi3g04586 1560 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1317 1346 - -
Vivi3g04586 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1497 1526 IPR013087 -
Vivi3g04586 1560 SMART JmjN_1 19 60 IPR003349 -
Vivi3g04586 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1529 1553 IPR013087 -
Vivi3g04586 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1515 1549 IPR036236 -
Vivi3g04586 1560 ProSiteProfiles JmjC domain profile. 175 344 IPR003347 -
Vivi3g04586 1560 Pfam jmjN domain 21 54 IPR003349 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1232 1256 - -
Vivi3g04586 1560 FunFam Probable lysine-specific demethylase ELF6 13 348 - -
Vivi3g04586 1560 Gene3D Classic Zinc Finger 1465 1551 - -
Vivi3g04586 1560 Pfam JmjC domain, hydroxylase 208 326 IPR003347 -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 1401 1426 - -
Vivi3g04586 1560 SUPERFAMILY Clavaminate synthase-like 189 358 - -
Vivi3g04586 1560 SMART c2h2final6 1467 1491 IPR013087 -
Vivi3g04586 1560 SMART c2h2final6 1527 1553 IPR013087 -
Vivi3g04586 1560 SMART c2h2final6 1444 1466 IPR013087 -
Vivi3g04586 1560 SMART c2h2final6 1497 1521 IPR013087 -
Vivi3g04586 1560 FunFam Probable lysine-specific demethylase ELF6 1494 1523 - -
Vivi3g04586 1560 MobiDBLite consensus disorder prediction 946 1021 - -
Vivi3g04586 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1527 1558 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04586 Vivi-Chr3 83177849 83186202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04586 1392 1558 C2H2 Transcription Factor Family AT3G48430 61.798 1.18e-66 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g04586 JmjC 1.6e-36 CL0029