Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04583 ATGGAACCCTCTCAGCAATCCAAATCAATCGATTCCTCCACCAACGACCCACAATTGATTCCTGAACTCTCAGATCTCAATCACGTGACCCATCTCGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGATGGGGATGAAATTCATGAAAAAGTTTCAAACTTTGAAGTTGCTGCTGTAGAATCTGAAAAGGGTCAGGAGTGTCATAATGATGACGGGTGGAATGGTGATGATGATGGGTGGAATGGGGATGATGAGGTGAATGACTGGGTTGAGAATGTGAATGTGAATGAGAATGTTGTTGTTAGTGGAGAAGTTGATCAAGTGGAGAACAAGGATGAAAGAAGCAATGGTAATGGTAGAGCTGAACTGTACCCTTTGAGGCCTGAAGCTGAAGACTGTTCCTTTTATCTCAAAACTGGGACTTGCAAATTTGGATCCAATTGCAAGTTTAATCACCCTCTTAGGAGAAGAAGCTCGGCTTTTAAAGAGAGAGTAGGAGATAGAGATGAATTGGAGAAAAGAGCAGGACAGACAGAATGCAAGTATTATACAAGGTCTGGGGGTTGTATGTTTGGAAAGGATTGTAAATTTGATCATTCCAGAGGAAAGTATTCAGCCGTCCAAGTTTTAGAGTTTAACTTCCTCGGACTACCTATTCGTTTGGGTGAGAAAGAGTGTCCCTATTACATGCAAACTGGCTCTTGTAAGTTTGGAGCAACCTGCAAGTTTAATCATCCCGATCCTACAACTGTTGGCGGATATGATTCCACTTCAGCATATGGTAATGGAAGTTCTATTTCATTACACAATGTATCACAGTCATCTTCTACCAGAAAATTCAATGAAACTGCAACATTTGTGCCAATCATAATTTCACCGACTCCGGGGGTTTCTCCTCGAAGCTCTGAATGGAATGGATATCAGGCACCTATATATTTATCAGAGAGGAGTACGCTTCCACCTTCACCATATGCCGTGAAGAACCCAGCTATTGAAACAAATGCTCATATGCACCGTCATAAGCAGACGTCTGCTGAAGAGTTTCCTGAAAGACCTGGTGAACCCGAGTGTAGTTTCTTCTTAAAAACTGGGGACTGCAAATTTAAGTTCCATTGCAAATTTCACCATCCAAAGAATCGGATTACAAGATCACCTCCTTGCAGCTTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATACATGCACGCATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACATGCCGCCCCCAACTATGCCTGGACTCTATCAACAATCCTCTTACACAAACTCTGCAAGTGTTGAGGAGGCAGGAAATGGAGATACTAGTGATGCAACAAATCAATAG 1386 0.4242 MEPSQQSKSIDSSTNDPQLIPELSDLNHVTHLDDELQNKLDLKDGDEIHEKVSNFEVAAVESEKGQECHNDDGWNGDDDGWNGDDEVNDWVENVNVNENVVVSGEVDQVENKDERSNGNGRAELYPLRPEAEDCSFYLKTGTCKFGSNCKFNHPLRRRSSAFKERVGDRDELEKRAGQTECKYYTRSGGCMFGKDCKFDHSRGKYSAVQVLEFNFLGLPIRLGEKECPYYMQTGSCKFGATCKFNHPDPTTVGGYDSTSAYGNGSSISLHNVSQSSSTRKFNETATFVPIIISPTPGVSPRSSEWNGYQAPIYLSERSTLPPSPYAVKNPAIETNAHMHRHKQTSAEEFPERPGEPECSFFLKTGDCKFKFHCKFHHPKNRITRSPPCSLSDKGLPLRPGQNTCTHYSRYGICKFGPACKFDHPINMPPPTMPGLYQQSSYTNSASVEEAGNGDTSDATNQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04583 461 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Vivi3g04583 461 PANTHER PROTEIN PHOSPHATASE RELATED 31 443 - -
Vivi3g04583 461 MobiDBLite consensus disorder prediction 432 461 - -
Vivi3g04583 461 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Vivi3g04583 461 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Vivi3g04583 461 SMART c3hfinal6 398 425 IPR000571 GO:0046872
Vivi3g04583 461 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Vivi3g04583 461 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Vivi3g04583 461 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872
Vivi3g04583 461 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Vivi3g04583 461 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g04583 461 SUPERFAMILY CCCH zinc finger 179 205 IPR036855 GO:0046872
Vivi3g04583 461 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g04583 461 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Vivi3g04583 461 SUPERFAMILY CCCH zinc finger 401 426 IPR036855 GO:0046872
Vivi3g04583 461 SUPERFAMILY CCCH zinc finger 128 156 IPR036855 GO:0046872
Vivi3g04583 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 401 424 IPR000571 GO:0046872
Vivi3g04583 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 154 IPR000571 GO:0046872
Vivi3g04583 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872
Vivi3g04583 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 247 IPR000571 GO:0046872
Vivi3g04583 461 Gene3D - 166 252 - -
Vivi3g04583 461 Gene3D - 338 425 - -
Vivi3g04583 461 SUPERFAMILY CCCH zinc finger 222 248 IPR036855 GO:0046872
Vivi3g04583 461 MobiDBLite consensus disorder prediction 430 461 - -
Vivi3g04583 461 Pfam RNA-binding, Nab2-type zinc finger 358 378 - -
Vivi3g04583 461 Gene3D - 87 165 - -
Vivi3g04583 461 ProSiteProfiles Zinc finger C3H1-type profile. 398 426 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04583 Vivi-Chr3 83093287 83096907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04583 348 441 C2H2 Transcription Factor Family AT3G02830 47.872 6.78e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04583 zf-CCCH 7.8e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02249 1 47414667 47418263 Vivi3g04583 3 83093287 83096907 ECH
Vivi3g04583 3 83093287 83096907 Vivi3g04583 3 83093287 83096907 ECH
Vivi1g02249 1 47414667 47418263 Vivi3g04583 3 83093287 83096907 PCT