Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04581 ATGGGTCGCAATCCTAAAGTGTGTACCTCTTGTATCCACAACTGTCGAATGTTTCATCGCCCTCTCCCACCAACCACAACCTCACCTTCCTCTTTCTACAAGTTCATGCTTCGTCAAAACGATCTCAAACATCTGTATCTTCCTCCTAAGTTAAAACGCACTATGTCTGGTTTGGTTGGTAAGAGCTTCAATCTTGAGGATTCAAGTGGTGGTAGATGGGATGTGACATTATCAAATGATGATGGTTCTTTAGCTTTTAAGGAAGGATGGGATGTTTTCTCACTGGATCACAAGCTTGAAGTAGGAGATTTAGTGGTATTCAGTAGCATTGACAAGCTGAAGTTTGGTGTCAAGATCTATGATGAATCTGTGTGTGAAAGAGTTGATTTTTCTAAAACAAGAATTAGGAAAAAAAGAGATAGAAATGGTGAGTTTGTTAGACAAGATCCAAATGCTTCACTTGTTGACTTGCAAACTGATGTGCCAATGCAAAACCAGCATACGGAGATTGATTTAGGAGAAACACGAAATAACGTTGAAGACACATGTTTCATAACAAGCAATGCATATCAAAATGATTTAAACAAAGATCCTATGGTTGAAGAAGTGCTGGGTACAGGAGATACCTCATATGCATCTAAACTTGAGTTGCATGGAAAGAACAATTGTCCAATGGAGCGCAAATCTCCTGATTTCATACTAGTAGAAAGTAACGAGCGCAAGTCTTTTACGTCCAATGGAGAAGTTCAAGAGGGCGAGGGCCAGTTCGCCGCCGGATTAGGGAGTGATCATGCGGCGATTTCCAGAGGAAAACATGCCTTGCATGCATTCGAACTTGAAACTTCTGGAAGAAACAATTCTCTTGGTGAATCAGACAAAAATGCATATGAAAAGACTTCAATTTTGAAACATGAAGAATACAAGAAGGGAAAGTCCCTTCTGTCCGAAAAGGAAATTCCAGAGTGCAGTTTTGCTGAAGGCTTAGGTTCAAGGAAGAAAGTGCCTATGAACATGACCCCCAAAAGGCGGGGAAGTTTTAATGATAAATTGCATGCAACAGAGTTGCCAAAGGTTGTTAAGGGAAAGCTTAATCAAAATAATGAGGGTCACTTTGAAACCGTAGCCCCTATTTCCTGCGAGGTGCTCAAGATTATGGTTGCACATGCTTAG 1170 0.4068 MGRNPKVCTSCIHNCRMFHRPLPPTTTSPSSFYKFMLRQNDLKHLYLPPKLKRTMSGLVGKSFNLEDSSGGRWDVTLSNDDGSLAFKEGWDVFSLDHKLEVGDLVVFSSIDKLKFGVKIYDESVCERVDFSKTRIRKKRDRNGEFVRQDPNASLVDLQTDVPMQNQHTEIDLGETRNNVEDTCFITSNAYQNDLNKDPMVEEVLGTGDTSYASKLELHGKNNCPMERKSPDFILVESNERKSFTSNGEVQEGEGQFAAGLGSDHAAISRGKHALHAFELETSGRNNSLGESDKNAYEKTSILKHEEYKKGKSLLSEKEIPECSFAEGLGSRKKVPMNMTPKRRGSFNDKLHATELPKVVKGKLNQNNEGHFETVAPISCEVLKIMVAHA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04581 389 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vivi3g04581 389 PANTHER B3 DOMAIN-CONTAINING 27 263 - -
Vivi3g04581 389 Gene3D - 25 125 IPR015300 -
Vivi3g04581 389 SUPERFAMILY DNA-binding pseudobarrel domain 28 125 IPR015300 -
Vivi3g04581 389 SMART B3_2 32 123 IPR003340 GO:0003677
Vivi3g04581 389 CDD B3_DNA 31 121 IPR003340 GO:0003677
Vivi3g04581 389 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04581 45 155 REM Transcription Factor Family AT4G33280 30.303 2.14e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g04581 B3 9.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04581 - - vvo:131656227 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04581 3 82993963 82996434 Vivi3g04581 3 82993963 82996434 ECH