Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04571 ATGGCCACCACCAACACCAACCATACTTCACACCCACATTCTAACAACGCCACCATCGACCCTAACTCCGGTTTCTCCTCTCATTCCAGAACCTTCCATAGCCTCCGTCCCAACATCCCTCTCCCTCCACCTTCCCTCCCTCTCTCCCTCACCGAATACATACTCTCTCTCATCCCCACCACCGCCACCGAAAACAACATCTCCGCCCTCATCGACTCCACCACCGACAACCACCTCACTTACCCCACCTTCATCCGCCAAATCAAATCCCTCGCTGCCTCCCTCCAATCACACACCTCTCTCTCCAAAGGCCACGTCGCATTAATCCTCACTCCAACTTCCCTACACGTCCCCGTACTCTATCTCGCCCTCTTCTCCCTTGGTGTCACCATCGCGCCTGCTAACCCGCTCAGCTCCCAATCCGAGTTAACTCACATCGTTAACCTCACTAAACCAGTCATCGCATTCGCATCTTCCTCAACCGCTTCAAAAATCCCCAACCTCCCTTACGGCACTATCGTAACCGACTCTCCTTCTTTCCTTTCCATGCTTAACTCCAACTCCGAGCCTCGCCGAGTCGAAACGAGTCAATCCGACACAGCTGCGATTCTCTTCTCTTCCGGAACCACCGGACGTGTCAAAGGCGTGCTGTTAACTCACCGTAACTTCATCGCGTTGATCGGAGGGTTTTGTTCACTGAAGCATGTTTACAATGACGGCCTTGAAAATGAACCGCATCCGGTCTCCCTCTTTCCGCTGCCACTTTTTCATGTGTTTGGCTTCTTCATGATGGTGAGAGCTATGGCTATGGGGGAGACGCTTGTGTTGATGGAGAGGTTTGATTTTGAAGGGATGTTGAAGTCTGTAGAGAAGTATAGGGTTTCGTATATGCCGGTGTCGCCACCGTTGGTTACGGCGTTCGCCAAGTCGGATTTGGCGAAGAAATATGATGTTAGTTCGATCAGGTTGTTGGGGTGCGGTGGCGCGCCGCTTGGTAAGGAAGTTGCGGAGAGCTTCAAAGCAAAATTCCCCAATGTGGACATTGTGCAGGGCTATGGTCTGACTGAAAGTGGAGGAGCGGCAGCAAGAATGATAGGTTTTGATGAGGCTACGCACCATGGTTCTGTGGGTCGACTAGCAGAAAATATGGAGGCTAAGATAGTTGACCCTGTTACTGGAGAGGCATTATCTCCTGGGCAAAGAGGGGAGCTTTGGATTCGAGGACCGATAATCATGAAAGGTTACATAGGAGATGACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGCTGAAGACCGGCGATCTTTGTTATTTTGACTCGGATGGTTTTCTATTCATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCACATACTCCTTACTAATCCTGAAATTGCGGATGTCGCAGTAGTTCCGTATCCTGATGAAGATGCTGGACAGATTCCAATGGCCTTTGTGGTAAGAAAGCCTGGAAGCAAGATCACTGCAGATCAGGTTATGGAGTATGTGGCAAAGCAGGTGTCACCATACAAGAAGATAAGACGTGTTTCTTTTATTAACTCTATTCCAAAATCTCCAGCAGGCAAAATTTTAAGAAGAGAATTAGTGGCTATTGCTCTAAATGGTGGTTCATCCAAATTGTGA 1683 0.4902 MATTNTNHTSHPHSNNATIDPNSGFSSHSRTFHSLRPNIPLPPPSLPLSLTEYILSLIPTTATENNISALIDSTTDNHLTYPTFIRQIKSLAASLQSHTSLSKGHVALILTPTSLHVPVLYLALFSLGVTIAPANPLSSQSELTHIVNLTKPVIAFASSSTASKIPNLPYGTIVTDSPSFLSMLNSNSEPRRVETSQSDTAAILFSSGTTGRVKGVLLTHRNFIALIGGFCSLKHVYNDGLENEPHPVSLFPLPLFHVFGFFMMVRAMAMGETLVLMERFDFEGMLKSVEKYRVSYMPVSPPLVTAFAKSDLAKKYDVSSIRLLGCGGAPLGKEVAESFKAKFPNVDIVQGYGLTESGGAAARMIGFDEATHHGSVGRLAENMEAKIVDPVTGEALSPGQRGELWIRGPIIMKGYIGDDKATVETLDSEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHILLTNPEIADVAVVPYPDEDAGQIPMAFVVRKPGSKITADQVMEYVAKQVSPYKKIRRVSFINSIPKSPAGKILRRELVAIALNGGSSKL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04571 560 FunFam 4-coumarate--CoA ligase 2 454 555 - -
Vivi3g04571 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 549 - -
Vivi3g04571 560 Gene3D - 454 554 IPR045851 -
Vivi3g04571 560 Gene3D - 39 453 IPR042099 -
Vivi3g04571 560 SUPERFAMILY Acetyl-CoA synthetase-like 69 554 - -
Vivi3g04571 560 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Vivi3g04571 560 CDD 4CL 69 548 - -
Vivi3g04571 560 Pfam AMP-binding enzyme 65 458 IPR000873 -
Vivi3g04571 560 MobiDBLite consensus disorder prediction 1 30 - -
Vivi3g04571 560 Pfam AMP-binding enzyme C-terminal domain 467 542 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04571 Vivi-Chr3 82871809 82875155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04571 14 560 Monolignol Biosynthesis Gene Families AT5G63380 59.715 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04571 K01904 - gmx:100804044 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04571 3 82871809 82875155 Vivi3g04571 3 82871809 82875155 ECH