Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04563 ATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTCTTCCATCTAGACTCAAAATCTTTAGAACAAAGAACAAGTTTGTCGCTGGGCCATTTGAGATAGAACCTATTAGGGTGACTCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACTATCCTTCACACTGGGGACTGGAAGATTGACGAGACACCGCTTGATGGGAAGGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCGACAAATGTGCTCTCGCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATAGAATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCTGAGGATATTGATGCTTATGCACCCCAGGATTTGCTTATTGTAACAACCGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATGCTTTCAAACTTACCAAAGAAGATATTATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAAGAATAGTTATGGGGAGAAATGAACACCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTTAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATCCGGCATACTACTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTAATCAGCATGGAAATATTTCGCCCTAAAAATTTAGAAAGTTTAGCTGGAAACACCTTGAAAGGGAAGATAAGAATTACCACGAGATGCCTATGGCTAGACAAAGGGAAGTTGTTAGATGCACTACATAAAGCTGCTCATGCAGCCCTTTCTAGCTGTCCTGTTAAAAGCCCACCGCCTCACATCGAAAGAACTGTGTCTGAAGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCGTTGCCATAGAAAACCCTGGAGCTGTTTTTGCGGATGAGATAAACAAAAAATTGTCTGGCAAGTCCCATGTTGGTCCTGGAATATCAACATTAAGAAAAGTAGTGGATGAACGATCCACCACAACGCAAATAAGAGATGATGACAATGATATTGAAGGACTATTACCTGAGAAAGACACCACTACAAGTGGAGCTGAGGGTGATTTACCCGATTCAGAGGATTCAAATGAATTTTGGAAACCATTCATTGCATCATCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACGAAAGGAGTATAAGTCCAATCTGAAGCAAGACGATTCTGAAGACATCGATGAAGCCAAGTCTGAAGAAATGTCTAATGCCGAGCCAGAGTCATCAAAATCAGTAAAGAAAAATAAATGGAAAGTTGAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAAATTTAAAGTTGTGAAGGGGAGAATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCGGTGGACGTCTTTGGTACAGAAATATGAGGAGATCAAGAATGGAAAGGATAGCAGAAAAAATTGGCCATATCTTGAAGACATGGAAAGGATATTGTCTAGCGAGGAAGCACCGGCTTCAAATTGA 2076 0.409 MELIKKRLKEHGIFLPSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPQDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSRIVMGRNEHLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRPKNLESLAGNTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKSPPPHIERTVSEVLRKMVRKYSGKRPEVIAVAIENPGAVFADEINKKLSGKSHVGPGISTLRKVVDERSTTTQIRDDDNDIEGLLPEKDTTTSGAEGDLPDSEDSNEFWKPFIASSVEKSIKANNGYVSRKEYKSNLKQDDSEDIDEAKSEEMSNAEPESSKSVKKNKWKVEEVKKLIDLRSDLRDKFKVVKGRMALWEEISQSLLADGISRSPGQCKSRWTSLVQKYEEIKNGKDSRKNWPYLEDMERILSSEEAPASN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04563 691 SUPERFAMILY Metallo-hydrolase/oxidoreductase 2 321 IPR036866 -
Vivi3g04563 691 CDD GT1 598 663 - -
Vivi3g04563 691 MobiDBLite consensus disorder prediction 565 597 - -
Vivi3g04563 691 SMART sant 596 658 IPR001005 -
Vivi3g04563 691 MobiDBLite consensus disorder prediction 499 516 - -
Vivi3g04563 691 ProSiteProfiles Myb-like domain profile. 592 656 IPR001005 -
Vivi3g04563 691 SUPERFAMILY Homeodomain-like 594 658 IPR009057 -
Vivi3g04563 691 Pfam Myb/SANT-like DNA-binding domain 598 681 IPR044822 -
Vivi3g04563 691 Gene3D - 221 337 IPR036866 -
Vivi3g04563 691 Gene3D - 1 158 IPR036866 -
Vivi3g04563 691 Gene3D - 600 661 - -
Vivi3g04563 691 MobiDBLite consensus disorder prediction 498 537 - -
Vivi3g04563 691 PANTHER RIBONUCLEASE J 1 689 - -
Vivi3g04563 691 Gene3D - 359 465 - -
Vivi3g04563 691 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 258 310 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04563 Vivi-Chr3 82715791 82725278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04563 599 684 Trihelix Transcription Factor Family AT2G38250 35.227 3.21e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g04563 Myb_DNA-bind_4 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04563 - - gmx:100783850 1122.84