Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04562 ATGGCCGCTCTCACGTCTCTCCCTCCCCTTCCTCACACTCTCCTTTGTCTCCGCTCAAAACCAACCAGACTCTCCGTTTCCGCTTCAGCGCTCTCAGCCTCAGGCAATGATGGATCTAGTTCTAGAGTACCTAAGAAGAGACGAGGAAGAATTGAAGGTCCAAGGAAAAGTATGGAGGATTCTGTTCAACGCAAGATGGAACAGTTTTATGAAGGTTCTGATGGACCGCCTTTACGCGTTCTACCTATTGGTGGTTTGGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGTTATATCCTCATTGATGCTGGTATCATGTTTCCTGACTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACTTTTATAAGAAAATGGAGCCACAAAATTGAAGCGCTTGTTATAACGCATGGTCATGAAGATCATATCGGTGCATTGCCTTGGGTCATCCCAGCATTGGATCCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTCTTCCATCTAGACTCAAAATCTTTAGAACAAAGAACAAGTTTGTCGCTGGGCCATTTGAGATAGAACCTATTAGGGTGACTCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACTATCCTTCACACTGGGGACTGGAAGATTGACGAGACACCGCTTGATGGGAAGGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCGACAAATGTGCTCTCGCCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATAGAATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCTGAGGATATTGATGCTTATGCACCCCAGGATTTGCTTATTGTAACAACCGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATGCTTTCAAACTTACCAAAGAAGATATTATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAAGAATAGTTATGGGGAGAAATGAACACCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTTAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATCCGGCATACTACTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTAATCAGCATGGAAATATTTCGCCCTAAAAATTTAGAAAGTTTAGCTGGAAACACCTTGAAAGGGAAGATAAGAATTACCACGAGATGCCTATGGCTAGACAAAGGGAAGTTGTTAGATGCACTACATAAAGCTGCTCATGCAGCCCTTTCTAGCTGTCCTGTTAAAAGCCCACCGCCTCACATCGAAAGAACTGTGTCTGAAGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCGTTGCCATAGAAAACCCTGGAGCTGTTTTTGCGGATGAGATAAACAAAAAATTGTCTGGCAAGTCCCATGTTGGTCCTGGAATATCAACATTAAGAAAAGTAGTGGATGAACGATCCACCACAACGCAAATAAGAGATGATGACAATGATATTGAAGGACTATTACCTGAGAAAGACACCACTACAAGTGGAGCTGAGGGTGATTTACCCGATTCAGAGGATTCAAATGAATTTTGGAAACCATTCATTGCATCATCAGTTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTTCACGAAAGGAGTATAAGTCCAATCTGAAGCAAGACGATTCTGAAGACATCGATGAAGCCAAGTCTGAAGAAATGTCTAATGCCGAGCCAGAGTCATCAAAATCAGTAAAGAAAAATAAATGGAAAGTTGAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAAATTTAAAGTTGTGAAGGGGAGAATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCGGTGGACGTCTTTGGTACAGAAATATGAGGAGATCAAGAATGGAAAGGATAGCAGAAAAAATTGGCCATATCTTGAAGACATGGAAAGGATATTGTCTAGCGAGGAAGCACCGGCTTCAAATTGA 2589 0.4152 MAALTSLPPLPHTLLCLRSKPTRLSVSASALSASGNDGSSSRVPKKRRGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDYDDLGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGIFLPSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPQDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSRIVMGRNEHLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRPKNLESLAGNTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKSPPPHIERTVSEVLRKMVRKYSGKRPEVIAVAIENPGAVFADEINKKLSGKSHVGPGISTLRKVVDERSTTTQIRDDDNDIEGLLPEKDTTTSGAEGDLPDSEDSNEFWKPFIASSVEKSIKANNGYVSRKEYKSNLKQDDSEDIDEAKSEEMSNAEPESSKSVKKNKWKVEEVKKLIDLRSDLRDKFKVVKGRMALWEEISQSLLADGISRSPGQCKSRWTSLVQKYEEIKNGKDSRKNWPYLEDMERILSSEEAPASN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04562 862 MobiDBLite consensus disorder prediction 670 687 - -
Vivi3g04562 862 CDD RNaseJ_MBL-fold 81 492 - -
Vivi3g04562 862 Gene3D - 82 494 IPR036866 -
Vivi3g04562 862 MobiDBLite consensus disorder prediction 28 61 - -
Vivi3g04562 862 SMART Lactamase_B_5a 90 287 IPR001279 -
Vivi3g04562 862 Gene3D - 771 832 - -
Vivi3g04562 862 CDD GT1 769 834 - -
Vivi3g04562 862 MobiDBLite consensus disorder prediction 736 768 - -
Vivi3g04562 862 Pfam Beta-lactamase superfamily domain 101 237 IPR001279 -
Vivi3g04562 862 SUPERFAMILY Homeodomain-like 765 829 IPR009057 -
Vivi3g04562 862 Pfam Myb/SANT-like DNA-binding domain 769 852 IPR044822 -
Vivi3g04562 862 SMART sant 767 829 IPR001005 -
Vivi3g04562 862 Gene3D - 279 429 IPR042173 -
Vivi3g04562 862 MobiDBLite consensus disorder prediction 41 61 - -
Vivi3g04562 862 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Vivi3g04562 862 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 429 481 IPR011108 -
Vivi3g04562 862 ProSiteProfiles Myb-like domain profile. 763 827 IPR001005 -
Vivi3g04562 862 MobiDBLite consensus disorder prediction 669 708 - -
Vivi3g04562 862 PANTHER RIBONUCLEASE J 1 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04562 Vivi-Chr3 82715791 82725823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04562 770 855 Trihelix Transcription Factor Family AT2G38250 35.227 4.87e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g04562 Lactamase_B_2 8.7e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04562 - - gmx:100783850 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04562 3 82715791 82725823 Vivi3g04562 3 82715791 82725823 ECH
Vivi1g02271 1 47990098 48002521 Vivi3g04562 3 82715791 82725823 PCT