Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04558 ATGATTACTGTTGTTTCTCGAAATGATCAGCGCGAGGGAGGTGACGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAATACCTGCTGCGCGCTAAACTCGGGTGATGAGGTGGTTTTCGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAGGTTGCAGCTAAGGGTGCAGAAGTTCAGAGTGGCGTTGGTAAATTTATGCAGCTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCAGCCTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGTACAGAAATTGAGCTTGATGGTCTGGAAGGCAACTCAACTCCAAATATAGGAACGGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGATCTCTCCTATGGATTACGATCCAGAGGATGCAGGCGCAGAGCCAGGCAATGTAAAGTTCTCTGGGGTGAATGATAAGCTAAGGCCTTTATTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAATGGGGCGGAGGATACACAAGCCGCATCGATTTCGGGTACATCTGTACGTAGTGCTGTTTTCAAAGAAGATGCTCATGCTGCAATACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGTGAAAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAATATACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTCGGTGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAGCTTCTCAAAGATGGATTTACTGCCGATAAATCTTGCAGCTGCGCCAAAGAAAGTCCTACAGCCACAGACACAGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATACACCTAGCTCTTCAAATGCACCTACTCCACATGGACTTGAATCTCAAGCTAAGTTGGAAGCTGATAATGTACCATCTACATCTGGAACAGCTAAAAATTGTTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTTTTAATTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAGCCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTGGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCGTACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACATACTCACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAATCAAAGGAAATTTGCACCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTTGAGGCCTTGTCTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCATCATCTGATGCAGAATTCTGATGTTGAAGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGTATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAACGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATACGTCAAAGCCGTTTTCTCCCTGGCAAGTAAAATTGCGCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGTTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTTGCAAAAGAAGATCTGTCGGCTGATGTTGATCTGGGTGCAATTGCAACTATGACCGATGGATATTCTGGAAGTGATCTCAAGAACTTATGTGTAACTGCTGCACACCGTCCTATTAAAGAAATATTAGAAAAGGAAAAAAAGGATCTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCTGAATCCGTTAATATGACGGAGCTTTTACAATGGAACGAACTCTATGGAGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3216 0.4226 MITVVSRNDQREGGDVAVLESTGSKGSVLVNGTLVKKNTCCALNSGDEVVFGLHGNHSYIFQQVNTEVAAKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSQPASKPHQGADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKISPMDYDPEDAGAEPGNVKFSGVNDKLRPLFRILAGSTTCKLKLSKSICKQVMEERNGAEDTQAASISGTSVRSAVFKEDAHAAILDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGFTADKSCSCAKESPTATDTAKSMDPPASETDTPSSSNAPTPHGLESQAKLEADNVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSDVEADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSADVDLGAIATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04558 1071 MobiDBLite consensus disorder prediction 363 399 - -
Vivi3g04558 1071 MobiDBLite consensus disorder prediction 142 178 - -
Vivi3g04558 1071 SUPERFAMILY SMAD/FHA domain 13 62 IPR008984 GO:0005515
Vivi3g04558 1071 Gene3D - 939 1033 - -
Vivi3g04558 1071 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 245 1070 - -
Vivi3g04558 1071 ProSitePatterns AAA-protein family signature. 910 929 IPR003960 GO:0005524|GO:0016887
Vivi3g04558 1071 SMART AAA_5 803 940 IPR003593 GO:0016887
Vivi3g04558 1071 MobiDBLite consensus disorder prediction 363 398 - -
Vivi3g04558 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1047 IPR027417 -
Vivi3g04558 1071 Pfam AAA+ lid domain 960 996 IPR041569 -
Vivi3g04558 1071 Coils Coil 727 747 - -
Vivi3g04558 1071 Gene3D - 765 1046 IPR027417 -
Vivi3g04558 1071 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 765 941 - -
Vivi3g04558 1071 Pfam ATPase family associated with various cellular activities (AAA) 807 936 IPR003959 GO:0005524|GO:0016887
Vivi3g04558 1071 Gene3D - 3 70 - -
Vivi3g04558 1071 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04558 Vivi-Chr3 82673274 82687629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04558 802 996 Calmodulin-binding Proteins AT3G56690 36.683 4.80e-30 127