Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04557 ATGGTTTCAACGAGACGCAACAGTGGTGGTGGATCTTTCCCCGCCGCTAATAACAACAACAACACCGCGAAAAGACCTTCTTCATCTTCCGATGACAAACCTCCTTCTCCTTCCCCTAAGCGCCAGAAGCCTGACAATGGTGCTGCTGCTGCTACTTCCTCGGACAAACCGATATCGATATCTCCGACGGAGAATTCCAAGGATTTGCGTACTCCTGAACCTCCCGCCGATCCGGGAGAATGTGCTCCCACCGATGCTCAGATCGATGAACCGGTCACCGCTGATGATGATAAAATCGAGGCAACACCGCCGATCGCTGACGGTTCTTTGCCGACTCTGGTAGCTGATAAACCTAGGGCTTCGTTCTCTTCATGGAGTTTATATCAAAAACAAAATCCAATCCTCGAGTCTTCAGCTCCCTGGTGTCGGCTTTTGTCACAGTCTGCACAGCATCCAAATGTTCCCATTTCCATACCCAACTTCACTATTGGCTCCAGTAGAAATTGCAATTTTCATTTAAAGGATCATACAATAAGTGGAAATTTATGCAAAATCAAACATACACAGCGCGAGGGAGGTGACGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAATACCTGCTGCGCGCTAAACTCGGGTGATGAGGTGGTTTTCGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAGGTTGCAGCTAAGGGTGCAGAAGTTCAGAGTGGCGTTGGTAAATTTATGCAGCTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCAGCCTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGTACAGAAATTGAGCTTGATGGTCTGGAAGGCAACTCAACTCCAAATATAGGAACGGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGATCTCTCCTATGGATTACGATCCAGAGGATGCAGGCGCAGAGCCAGGCAATGTAATGGAAGAAAGAAATGGGGCGGAGGATACACAAGCCGCATCGATTTCGGGTACATCTGTACGTAGTGCTGTTTTCAAAGAAGATGCTCATGCTGCAATACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGTGAAAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAATATACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTCGGTGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAGCTTCTCAAAGATGGATTTACTGCCGATAAATCTTGCAGCTGCGCCAAAGAAAGTCCTACAGCCACAGACACAGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATACACCTAGCTCTTCAAATGCACCTACTCCACATGGACTTGAATCTCAAGCTAAGTTGGAAGCTGATAATGTACCATCTACATCTGGAACAGCTAAAAATTGTTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTTTTAATTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAGCCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTGGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCGTACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACATACTCACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAATCAAAGGAAATTTGCACCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTTGAGGCCTTGTCTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCATCATCTGATGCAGAATTCTGATGTTGAAGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGTATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAACGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATACGTCAAAGCCGTTTTCTCCCTGGCAAGTAAAATTGCGCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGTTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTTGCAAAAGAAGATCTGTCGGCTGATGTTGATCTGGGTGCAATTGCAACTATGACCGATGGATATTCTGGAAGTGATCTCAAGAACTTATGTGTAACTGCTGCACACCGTCCTATTAAAGAAATATTAGAAAAGGAAAAAAAGGATCTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCTGAATCCGTTAATATGACGGAGCTTTTACAATGGAACGAACTCTATGGAGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3651 0.4328 MVSTRRNSGGGSFPAANNNNNTAKRPSSSSDDKPPSPSPKRQKPDNGAAAATSSDKPISISPTENSKDLRTPEPPADPGECAPTDAQIDEPVTADDDKIEATPPIADGSLPTLVADKPRASFSSWSLYQKQNPILESSAPWCRLLSQSAQHPNVPISIPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGGDVAVLESTGSKGSVLVNGTLVKKNTCCALNSGDEVVFGLHGNHSYIFQQVNTEVAAKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSQPASKPHQGADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKISPMDYDPEDAGAEPGNVMEERNGAEDTQAASISGTSVRSAVFKEDAHAAILDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGFTADKSCSCAKESPTATDTAKSMDPPASETDTPSSSNAPTPHGLESQAKLEADNVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSDVEADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSADVDLGAIATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04557 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1192 IPR027417 -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 508 544 - -
Vivi3g04557 1216 Gene3D - 140 249 - -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 321 353 - -
Vivi3g04557 1216 ProSitePatterns AAA-protein family signature. 1055 1074 IPR003960 GO:0005524|GO:0016887
Vivi3g04557 1216 Gene3D - 1084 1178 - -
Vivi3g04557 1216 Coils Coil 872 892 - -
Vivi3g04557 1216 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 390 1215 - -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 508 543 - -
Vivi3g04557 1216 Pfam FHA domain 162 231 IPR000253 GO:0005515
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 47 68 - -
Vivi3g04557 1216 Gene3D - 910 1191 IPR027417 -
Vivi3g04557 1216 Pfam ATPase family associated with various cellular activities (AAA) 952 1081 IPR003959 GO:0005524|GO:0016887
Vivi3g04557 1216 CDD FHA 143 241 - -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 1 87 - -
Vivi3g04557 1216 SUPERFAMILY SMAD/FHA domain 127 241 IPR008984 GO:0005515
Vivi3g04557 1216 SMART AAA_5 948 1085 IPR003593 GO:0016887
Vivi3g04557 1216 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 910 1086 - -
Vivi3g04557 1216 Pfam AAA+ lid domain 1105 1141 IPR041569 -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 1 35 - -
Vivi3g04557 1216 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04557 Vivi-Chr3 82672444 82687629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04557 911 1159 Calmodulin-binding Proteins AT3G56690 39.844 5.47e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04557 - - tpra:123897002 2144.39