Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04556 ATGGTTTCAACGAGACGCAACAGTGGTGGTGGATCTTTCCCCGCCGCTAATAACAACAACAACACCGCGAAAAGACCTTCTTCATCTTCCGATGACAAACCTCCTTCTCCTTCCCCTAAGCGCCAGAAGCCTGACAATGGTGCTGCTGCTGCTACTTCCTCGGACAAACCGATATCGATATCTCCGACGGAGAATTCCAAGGATTTGCGTACTCCTGAACCTCCCGCCGATCCGGGAGAATGTGCTCCCACCGATGCTCAGATCGATGAACCGGTCACCGCTGATGATGATAAAATCGAGGCAACACCGCCGATCGCTGACGGTTCTTTGCCGACTCTGGTAGCTGATAAACCTAGGGCTTCGTTCTCTTCATGGAGTTTATATCAAAAACAAAATCCAATCCTCGAGTCTTCAGCTCCCTGGTGTCGGCTTTTGTCACAGTCTGCACAGCATCCAAATGTTCCCATTTCCATACCCAACTTCACTATTGGCTCCAGTAGAAATTGCAATTTTCATTTAAAGGATCATACAATAAGTGGAAATTTATGCAAAATCAAACATACACAGCGCGAGGGAGGTGACGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAATACCTGCTGCGCGCTAAACTCGGGTGATGAGGTGGTTTTCGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAGGTTGCAGCTAAGGGTGCAGAAGTTCAGAGTGGCGTTGGTAAATTTATGCAGCTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCAGCCTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGTACAGAAATTGAGCTTGATGGTCTGGAAGGCAACTCAACTCCAAATATAGGAACGGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGATCTCTCCTATGGATTACGATCCAGAGGATGCAGGCGCAGAGCCAGGCAATGTAAAGTTCTCTGGGGTGAATGATAAGCTAAGGCCTTTATTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAATGGGGCGGAGGATACACAAGCCGCATCGATTTCGGGTACATCTGTACGTAGTGCTGTTTTCAAAGAAGATGCTCATGCTGCAATACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGTGAAAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAATATACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCAAAATACTTCGGTGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAGCTTCTCAAAGATGGATTTACTGCCGATAAATCTTGCAGCTGCGCCAAAGAAAGTCCTACAGCCACAGACACAGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATACACCTAGCTCTTCAAATGCACCTACTCCACATGGACTTGAATCTCAAGCTAAGTTGGAAGCTGATAATGTACCATCTACATCTGGAACAGCTAAAAATTGTTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTTTTAATTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAGCCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTGGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCGTACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACATACTCACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAATCAAAGGAAATTTGCACCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTTGAGGCCTTGTCTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCATCATCTGATGCAGAATTCTGATGTTGAAGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGTATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAACGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATACGTCAAAGCCGTTTTCTCCCTGGCAAGTAAAATTGCGCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGTTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTTGCAAAAGAAGATCTGTCGGCTGATGTTGATCTGGGTGCAATTGCAACTATGACCGATGGATATTCTGGAAGTGATCTCAAGAACTTATGTGTAACTGCTGCACACCGTCCTATTAAAGAAATATTAGAAAAGGAAAAAAAGGATCTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCTGAATCCGTTAATATGACGGAGCTTTTACAATGGAACGAACTCTATGGAGAAGGTGGTTCAAGAGTTAAGAAAGCACTAAGCTATTTCATGTGA 3753 0.4311 MVSTRRNSGGGSFPAANNNNNTAKRPSSSSDDKPPSPSPKRQKPDNGAAAATSSDKPISISPTENSKDLRTPEPPADPGECAPTDAQIDEPVTADDDKIEATPPIADGSLPTLVADKPRASFSSWSLYQKQNPILESSAPWCRLLSQSAQHPNVPISIPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGGDVAVLESTGSKGSVLVNGTLVKKNTCCALNSGDEVVFGLHGNHSYIFQQVNTEVAAKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSQPASKPHQGADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKISPMDYDPEDAGAEPGNVKFSGVNDKLRPLFRILAGSTTCKLKLSKSICKQVMEERNGAEDTQAASISGTSVRSAVFKEDAHAAILDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGFTADKSCSCAKESPTATDTAKSMDPPASETDTPSSSNAPTPHGLESQAKLEADNVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSDVEADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSADVDLGAIATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 542 577 - -
Vivi3g04556 1250 Pfam ATPase family associated with various cellular activities (AAA) 986 1115 IPR003959 GO:0005524|GO:0016887
Vivi3g04556 1250 Coils Coil 906 926 - -
Vivi3g04556 1250 Pfam AAA+ lid domain 1139 1175 IPR041569 -
Vivi3g04556 1250 Gene3D - 944 1225 IPR027417 -
Vivi3g04556 1250 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 424 1249 - -
Vivi3g04556 1250 ProSitePatterns AAA-protein family signature. 1089 1108 IPR003960 GO:0005524|GO:0016887
Vivi3g04556 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 945 1226 IPR027417 -
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 542 578 - -
Vivi3g04556 1250 Pfam FHA domain 162 231 IPR000253 GO:0005515
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 47 68 - -
Vivi3g04556 1250 Gene3D - 1118 1212 - -
Vivi3g04556 1250 SMART AAA_5 982 1119 IPR003593 GO:0016887
Vivi3g04556 1250 SUPERFAMILY SMAD/FHA domain 127 241 IPR008984 GO:0005515
Vivi3g04556 1250 CDD FHA 143 241 - -
Vivi3g04556 1250 Gene3D - 140 249 - -
Vivi3g04556 1250 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 944 1120 - -
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 1 87 - -
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 321 344 - -
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 1 35 - -
Vivi3g04556 1250 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04556 Vivi-Chr3 82672444 82687629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04556 945 1193 Calmodulin-binding Proteins AT3G56690 39.844 4.99e-42 166