Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04555 ATGGTATCTCAAGGTACAAATTATGTCCTATGGTATTTTGTTTTCTCAATTGTCATTGTTATTCTATTCACTCCAAGACTTAGTTATGCCGAACAATCAGAGTTAATGGATTCGAATATGAACATGATTGATCATTGTTGGAGGCCAAATCCTGAATGGAGGAGGCATAAGCAACAAATAGCAACTTGCTCTGTAGGCTATGCTGGAAAAATGGTAAACAACATTGGTAAGGACCTCATACATTATAAAGTTACTGATCCAAATGATGACCCTATAAACCCCAAATTGGGTACATTGAGATATGGAGCATCTGTAATTCAAGGTAAAGTATGGATCACATTTCAAAAAGACATGAACATTAGACTCGTGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGGGTCAATATCCATATTGCCGACAATGCATGTTTAATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAATTCACCATTGCAAAGCTCAAGCCCCGGGGATGGTGATGGGGCCTAATGGGAAGGTAATTCATTTGGGACCCGTTGATGGAGATGCAATAAGATTAGTTACCGCTTCAAAAGTTTGGATTGATCATAATACACTTTATGATTGTGAAGATGGTCTTCTTGATGTCACTCGAGGCTCTAGTAACGTGACTATATCCAATAATTGGTTTAGAGAACAAGATAAAGTCATGCTTCTTGGTCATGATGATGGATACGTGAGAGACAAAAACATGAAGGTTACTGTTGTGTATAATTATTTTGGACCTAACTGCAACCAACGAATGCCTAGAATTCGTCATGGATATGCACATGTAGCAAACAATCTTTATTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGGGACCTAGTCTAAAGAGTGAGTCTAACCTCTTTATAGCACCAAAAGTTGGGAGTAAGGAGGTAACATGGAGAAACATTGGTCAAACAAGTGGGAACAAATGGGAGTTTCATTCGGTAAGAGATGCATTTGAAAATGGAGCCTCTTTTGCGGTAACAAAAGGTGGACGTGTGCCGAAGCCGAATTACAACAAAGAACAAAGTTTTAAAGTTGTCGATGTTAAATATGTTAGATCATTGACAAGATTTTCAGGTGCATTTCAATGTGGTAGAAGCTCTATATGTTGA 1176 0.3844 MVSQGTNYVLWYFVFSIVIVILFTPRLSYAEQSELMDSNMNMIDHCWRPNPEWRRHKQQIATCSVGYAGKMVNNIGKDLIHYKVTDPNDDPINPKLGTLRYGASVIQGKVWITFQKDMNIRLVKPLLISSFTTIDGRGVNIHIADNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVIHLGPVDGDAIRLVTASKVWIDHNTLYDCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNYFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRNIGQTSGNKWEFHSVRDAFENGASFAVTKGGRVPKPNYNKEQSFKVVDVKYVRSLTRFSGAFQCGRSSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04555 391 Gene3D - 40 384 IPR012334 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Vivi3g04555 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Vivi3g04555 391 SMART amb_all 117 314 IPR002022 -
Vivi3g04555 391 SUPERFAMILY Pectin lyase-like 30 357 IPR011050 -
Vivi3g04555 391 PANTHER PECTATE LYASE 18-RELATED 37 387 IPR045032 GO:0030570
Vivi3g04555 391 Pfam Pectate lyase 128 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04555 Vivi-Chr3 82642849 82644631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04555 71 318 Polysaccharide Lyase AT5G09280 72.177 6.82e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04555 K01728 - gmx:100780437 663.685