Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04505 ATGACTAAGCAGAATAATGTAGTGGTGACAGTGACACCTGAAGTTAAGTCATGTATTAACACGCTTATCTCCGCCGTAGTTTTGCCTAGTGCAGCCACCGCGCCGGAGTCGATGGCGGTGATCGGTGGTTTTTTGGGGTTTTCTAGTAACAATTTTATTAAGAGATTGGAAGGTGGTAATGTTAATGGTTGGATTGATTCAATGAGAGCTGCTTCTCCAACTCGAGTCAAATCTTCGGAAAATTATCAAGAAAAATGTTCATGGATTCTTTATCATCCTTCGGCACTGAAATTGTTTGATCAAATATTGTTTAGTTCAAAAGGAAAACAGATTGTGTTTTTTCTTGACTATGATGGAACTCTCTCTCCTATTGTTGCTGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGGAACACTCAAGAATGTAGCAAGAAATTTTCCTACAGCTATAGTGACCGGAAGGTGCAGAGATAAGGTATTTAACTTCGTAAAATTGGCGGAGTTATACTATGCAGCAAGCCATGGTATGGACATCATGGGACCAACAAAAAACCAAACTGCTGAAAAAAGTAAAAGTGATAGTAATAAAGCAGTGTCGTTCCAACCAGCAAGTCAATTTCTACCAATGATCGATGAAGTGTATAAAATTTTGTTAGAAAAAACAAAATCTGTCCCTGGAGCTATGGTAGAGAACAACAAATATTGCTTATCAGTGCATTTCCGATGCGTTGACGAAAAGAGTTGGGCTCCTTTGGCTGAGAAAGTAAGATTGGTACTGAATGAATATCCAAAACTTAGGCTAACACAAGGAAGAAAAGTGTTGGAGATTCGTCCCACTATCAAATGGGACAAAGGAAAGGCTCTTGAGTTTTTGTTGGAATCTTTAGGATATGAGAATTCTAATGATGTTTTCCCAATCTACATCGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGAGTAGAAGGGGTCAAGGAGTTGGGATTCTTGTTTCTAGTGTTCCAAAAGAAACAGATGCTTCCTACACTCTTCAAGATCCATCAGAGGTTGAGAATTTTTTGCGGCGATTGGTGGAATGGAAAAGATTGAGTGGTGTGAACCCTACAAGTGCATAG 1125 0.3911 MTKQNNVVVTVTPEVKSCINTLISAVVLPSAATAPESMAVIGGFLGFSSNNFIKRLEGGNVNGWIDSMRAASPTRVKSSENYQEKCSWILYHPSALKLFDQILFSSKGKQIVFFLDYDGTLSPIVADPDKAFMTRKMRGTLKNVARNFPTAIVTGRCRDKVFNFVKLAELYYAASHGMDIMGPTKNQTAEKSKSDSNKAVSFQPASQFLPMIDEVYKILLEKTKSVPGAMVENNKYCLSVHFRCVDEKSWAPLAEKVRLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLSRRGQGVGILVSSVPKETDASYTLQDPSEVENFLRRLVEWKRLSGVNPTSA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04505 374 CDD HAD_TPP 112 355 - -
Vivi3g04505 374 NCBIfam trehalose-phosphatase 109 361 IPR003337 GO:0003824|GO:0005992
Vivi3g04505 374 Pfam Trehalose-phosphatase 114 351 IPR003337 GO:0003824|GO:0005992
Vivi3g04505 374 NCBIfam HAD-IIB family hydrolase 113 326 IPR006379 -
Vivi3g04505 374 Gene3D - 219 369 IPR023214 -
Vivi3g04505 374 Gene3D - 111 211 IPR023214 -
Vivi3g04505 374 FunFam Trehalose 6-phosphate phosphatase 205 281 - -
Vivi3g04505 374 FunFam Trehalose 6-phosphate phosphatase 211 370 - -
Vivi3g04505 374 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 368 IPR044651 GO:0004805|GO:0005992
Vivi3g04505 374 SUPERFAMILY HAD-like 112 363 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04505 Vivi-Chr3 81558948 81561277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04505 107 360 Trehalose Biosynthesis Gene Families AT1G70290 26.471 1.89e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04505 K01087 - gmx:100788641 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04505 3 81558948 81561277 Vivi3g04505 3 81558948 81561277 ECH
Vivi7g01142 7 59157556 59160298 Vivi3g04505 3 81558948 81561277 PCT