Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04502 ATGAGTCGGGCTAGTGCAGCTGGTGCCAAGGGAAAGAAGAAGGGTGCAACCTTCACCATTGACTGTGCTAAGCCAGTTGAAGACAAGATCATGGACATTGCTTCCCTTGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTAGTGCTCTAGGTGATTCTGTTACTGTTACCAGGGAGAAATCCAAGATTACTGTTACCTCTGACAGTAATTTTTCCAAGAGTTTGAATCATTGTTGA 246 0.4431 MSRASAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKASALGDSVTVTREKSKITVTSDSNFSKSLNHC 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04502 81 Gene3D - 5 80 IPR038526 -
Vivi3g04502 81 PANTHER 60S RIBOSOMAL PROTEIN L22 1 77 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vivi3g04502 81 Pfam Ribosomal L22e protein family 14 77 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vivi3g04502 81 FunFam 60S ribosomal protein L22-2 5 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04502 Vivi-Chr3 81440420 81441217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04502 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 82.895 1.13e-40 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04502 K02891 - csav:115719687 134.42