Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04500 ATGGCAGCTATGATGGATTTATACAGTAACACACAACTTCACATGGATCCTTATGCAGATCCGTTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCCCCAATATCTACTGCACCATCACCTTCTTGTTCTTCTTATTCTCTCGCTGAACCTTCTCTCTCTTCTTTCCCTTCTTTCTACAATGATGGTTGTTCTACGAACTTCATAGGCTTTGTTCAACAACCATCTTCTACTCCTTCTTCTTCTCTTCTTGGTCTTAACCATTTGACCCCATCTCAAATCAACCAGATTCAATCCCAAATCCAACTTCAAAACTTTACCTTGCAACAACACCAACAACAGCAACGTCTCAGTCTCAGTAACACTCTTAGCTTCCTCAGCCCGAAGCCGATCCCTATGAAGCACGTGGGTAGTACTCCTTCAAAGCCCACGAAGCTATACAGAGGGGTGAGGCAAAGGCACTGGGGAAAATGGGTTGCTGAGATCAGACTACCTAAGAACCGTACCAGGCTTTGGCTTGGTACGTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTTCGTGGTGACTTCGCTAGGCTGAATTTCCCGAATCTGAAACACCAAGGTTCATGTATTGGCGTTGGTGGTGAGTTTGGTGAGTATAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGAAAGTCAGAGAAGCCTAAGAAAACACCAGCGGCTCGGTCCAAAGCTGCGTCGAAGGTGGTACCCGTACCACCTTCGACCGTGGAGAAGTCTGTTGATGATTTGAACAAGGTTTCCAGTTCAGGTTCAGGTTCAGGTTTAGAAGGGTGTTGTAAGGTTGAGGTTTCGCTTTCTCCGGTGATGACTGAGAGTGAAGGCTCTGAAGGCTCTTCACCACTTTCTGATCTGACTTTTGGTGATGTTGGTGAGCCACAGTGGGAAGGTGATTCAGAAAATTTTAATTTGCTGAAGTACCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1077 0.4448 MAAMMDLYSNTQLHMDPYADPFRGELMEVLEPFIKSPSPISTAPSPSCSSYSLAEPSLSSFPSFYNDGCSTNFIGFVQQPSSTPSSSLLGLNHLTPSQINQIQSQIQLQNFTLQQHQQQQRLSLSNTLSFLSPKPIPMKHVGSTPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCIGVGGEFGEYKPLPSSVDAKLQAICEGLAEMQKQGKSEKPKKTPAARSKAASKVVPVPPSTVEKSVDDLNKVSSSGSGSGLEGCCKVEVSLSPVMTESEGSEGSSPLSDLTFGDVGEPQWEGDSENFNLLKYPSYEIDWDSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04500 358 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 MobiDBLite consensus disorder prediction 282 296 - -
Vivi3g04500 358 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Vivi3g04500 358 MobiDBLite consensus disorder prediction 310 324 - -
Vivi3g04500 358 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 358 - -
Vivi3g04500 358 MobiDBLite consensus disorder prediction 247 341 - -
Vivi3g04500 358 FunFam Ethylene-responsive transcription factor 2 150 209 - -
Vivi3g04500 358 CDD AP2 150 210 IPR001471 GO:0003700|GO:0006355
Vivi3g04500 358 SUPERFAMILY DNA-binding domain 151 208 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04500 Vivi-Chr3 81416836 81418675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04500 1 358 AP2-EREBP Transcription Factor Family AT1G78080 51.596 6.07e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g04500 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04500 K09286 - gmx:100800478 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04500 3 81416836 81418675 Vivi3g04500 3 81416836 81418675 ECH
Vivi7g01140 7 59071172 59073065 Vivi3g04500 3 81416836 81418675 PCT