Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04479 ATGTCGTCATCATCCTCATCCAATAACAACTCTCCACCATGTGCAGCGTGCAAGATTCAGCGAAGAAAATGCACCCAAGACTGCATTTTCAAACCCTACTTTCCTTCCAACAACCCTCAAAAGTTTCTCTACGTACACAAAGTGTTCGGTGCTAGTAACGTTGCGAAGCTACTCAACGAGGTGAACGAGTCGCAACGTGAGGATACTGTGAGTTCTCTGGCTTATGAAGCAGAAGCGCGTTTGAGGGATCCTGTTTATGGTTGCGTTGGGCTTATTTCGTCGCTTCAGGATAAACTCAAAAGCGTGCAGAATGAACTTTATAATGCCAAGAAGGATCTTGCTTGTTATGTTGGGCCTCAGGCTTTTCTTCCTCCTCCTCTTTCGCCGCCGTTGCCTCCGACGGCGACGAATGTGAATCCTTTTTATACTCAGCAACAGCAACAGCGTCAAGATGTTTTTGGTTATAATGGCGATAATGAAAACTTGTATTCGAACTTTCAAGCGCAGTCTTTTCATCATCCGTTAATGGTTTCTTCAGAACAGCTACAACAACAACAACAACCTAATAATGGGTTTTGCTCCAAGAAGTTTTTAAAGATGGAAAGACAAAATCTTGGATAG 621 0.4348 MSSSSSSNNNSPPCAACKIQRRKCTQDCIFKPYFPSNNPQKFLYVHKVFGASNVAKLLNEVNESQREDTVSSLAYEAEARLRDPVYGCVGLISSLQDKLKSVQNELYNAKKDLACYVGPQAFLPPPLSPPLPPTATNVNPFYTQQQQQRQDVFGYNGDNENLYSNFQAQSFHHPLMVSSEQLQQQQQPNNGFCSKKFLKMERQNLG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04479 206 Coils Coil 92 112 - -
Vivi3g04479 206 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vivi3g04479 206 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vivi3g04479 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04479 Vivi-Chr3 80756480 80757100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04479 1 124 AS2 family AT5G66870 71.774 4.05e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g04479 LOB 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04479 - - mtr:25489402 233.417