Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04475 ATGAACCGTCAAGTGCTACCACCGTTGCCGAAGAATGCTAGCTCGGTGGATCCTAAAATCTGGCGAGCAATCGCCGGCTCCGCCGTGCATATCCCCGCCGTTAATTCTAGGGTTTATTATTTTCCTCAAGGACACATGGACCAAGCTTCTTCGCCTCCGAATAACCTTTCTCCGCAACTGCTTTCACGGCCTTACATTCTTTGTTCGGTTTCTGCTGTTCATTTTCTCGCTGATCCGAAAACCGATGAGGTTTTTGCGAAGCTGTTTCTTCAGCCTCTCAATGATTTCGCTGCCATTTTTCCTCGTGTTCCTGCTCCGGAAGTTGATGACGGTGAGAGGATTTTCTCGTTTGCGAAGATTCTTACTCCGTCGGATGCTAACAACGGAGGTGGATTCTCCGTTCCGAGGTTTTGCGCTGACTCGATTTTCCCGCCGCTGGATTATAGTATGGACCCTCCGTATCAGTCTCTTGTGATTACTGACGTGCACGGTATGGCTTGGGAGTTTCGTCATATTTACCGTGGTACGCCGAGGCGGCATCTGCTTACTACCGGTTGGAGTAGGTTCGTTAACGGGAAGAAACTTGTTGCCGGTGATTCCGTTGTTTTCATGAAGAATACTAGAGGTGTAATGTTCATCGGGATCCGTCGTGCTGTCCGTTTTGTTCCGGCTCGGAGTGCTAGCGACGCTGCGAGATTGTGTCTTCCGATCTGCGGGGTGAGAAACAGGGTGGATGATGAAGATGAGGAAAATCAGGTGGAAGAGAAGTGTAGGGAGGGGTTTTCGAGGAACGGGAAAGGGAAGTTGTCGCCGAAATCGGTTGCGGAGGCGGCGGAATTGGCGGCTCAGGGGTTGGCGTTTGAAGTTGTGTACTATCCGAAAGCTGGTTGGTCGGATTTTGTGGTGAAAGCTGAGGTTGTTGATGCAGCAATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACATGGTTTCAGGGTGTAGTGTCCTCAGTCTCTGTTCCTGAACATGGCCCTTGGGGAGGTTCCCCTTGGCGTATGCTTCAGATTACATGGGATGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGATCGAACTTCTTTCTACTACACCTTCACTGCATACACCATTTCCCTCAATGAAAAGGCTTAGAGGGCCCCATGGGGTGTTAACTGATGGAGATCCCTTTTCCATCACAGCATTCGCTAATTCAACAATGGGACAATTGAATCAATCATTGTTGAGTTACGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAGTTTTTCCAACTTTCCAGGTGAAAACCCCCGTCTGTGTATGAGTAACTCCTTTGGCAACAACACAGTGCTGGGGTTGAAATCTTTGTCAACTGAGCTAAATGTTGGCAGTTCTCAATCTGATGATTTTTCACCAGAGAGCCAGAATAGTTTGCCTTCCTTTGGCACAGATTTTGTCCGGAACTACAACTGCAACTCAATGAAACCTGGGCCTGTATCGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACGGCCTGTTGAAAGTGGTTCGCATGGTACTGGTAGCCCTGGAGATGATAGCAGTAAGGGCTGCAATGAAACTGAAGGCATGAACAACCCTCTTGAGGATTCTTTGATTTACTCAAAATTGCTTGACAGACTTGATGGCCAGTGCCAAATAGCCTCAACTGTCGAGGCATGCTATTTGTGA 1782 0.4832 MNRQVLPPLPKNASSVDPKIWRAIAGSAVHIPAVNSRVYYFPQGHMDQASSPPNNLSPQLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFAAIFPRVPAPEVDDGERIFSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPYQSLVITDVHGMAWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGVMFIGIRRAVRFVPARSASDAARLCLPICGVRNRVDDEDEENQVEEKCREGFSRNGKGKLSPKSVAEAAELAAQGLAFEVVYYPKAGWSDFVVKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSSVSVPEHGPWGGSPWRMLQITWDEPEVLQTSKWVSPWQIELLSTTPSLHTPFPSMKRLRGPHGVLTDGDPFSITAFANSTMGQLNQSLLSYGTFPAGMQGARHDLFSVSSFSNFPGENPRLCMSNSFGNNTVLGLKSLSTELNVGSSQSDDFSPESQNSLPSFGTDFVRNYNCNSMKPGPVSFQLFGAVIQTERPVESGSHGTGSPGDDSSKGCNETEGMNNPLEDSLIYSKLLDRLDGQCQIASTVEACYL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04475 593 Gene3D - 114 219 IPR015300 -
Vivi3g04475 593 SMART B3_2 117 219 IPR003340 GO:0003677
Vivi3g04475 593 MobiDBLite consensus disorder prediction 535 562 - -
Vivi3g04475 593 FunFam Auxin response factor 115 219 - -
Vivi3g04475 593 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi3g04475 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 555 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi3g04475 593 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Vivi3g04475 593 CDD B3_DNA 115 217 IPR003340 GO:0003677
Vivi3g04475 593 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Vivi3g04475 593 Gene3D - 315 388 - -
Vivi3g04475 593 MobiDBLite consensus disorder prediction 537 562 - -
Vivi3g04475 593 SUPERFAMILY DNA-binding pseudobarrel domain 113 224 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04475 Vivi-Chr3 80516711 80521432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04475 12 559 B3 DNA Binding Superfamily AT1G77850 47.965 3.42e-167 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi3g04475 B3 2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04475 - - qsa:O6P43_019702 743.421