Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04465 ATGGACATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGATAACTTTAAAGTTGAAGGTGGTTTGAATTCAATTGCTTCTTCACCAATGTTAATGGTGAACACTAGTACCATAGAGAACAAGAGTGAATATGTTCCTCATGAACCAAGAGAGCCTTCTGGAGCTGATCAAGAGACTACAGATCATAAGGTGCTAAGACGGCTCGCTCAGAATCGAGAGGCTGCTAGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAACTAGAGTTGGAGATTGGAAGAGCAAGAAAGCAGTTGCAGGGTATGTGCACTGGAAACTCATTAGATACAAGTTTTATGGGATCATCTGAAACAATAAATCCAGGAATTGTCGCGTTTGAAATCGAATATGGAAATTGGGTGGACGAGAGTCATAGGCGTAACAATGAGCTCAGAAGTGTGTTTCAAGCTAACGCGCCCGAAGTGCAGCTCAGTCAAGCTGTTCGGAGTGTCTTGGATCATTACGCGGATCTTTTTCGAATGAAAGCAGACGCTGCGAAGGCTGATGTCCTTTATTTAATCTCGGGCGTATGGAAAGCATCGGCCGAACGCCTTTTCTTATGGATCGGAGGATCACGCCCATCACAGCTTCTAAATATAATCGTGCCACAGCTCGAGCTATTGACCGATCCACAAATGGCTGGCATAAAAAAGCTTTGCCTGTGTTCTCAGCAAGCTGAAGATGCTCTTTCGCAAGGACTCGATAAACTCCAGCAGAGTCTTGTACAAGATATGTCAGTTGATCCATTCAGTGCAGTAAATCATGGAATGCAAATGGCTTTAGCTATAGGAAAATTTGAAGCGCTAGAAGGTTTCGTAATCCAGGCAGATCACCTTAGGCAGCAAACTTTGATACACATGTCGCGAATTCTGACCACTCACCAAGCTGCTAGAGGCTTGATTGCTCTCGGGGAATACTTTCATCGTCTTCAAACTCTTTGTTCTATTTGGACTTCTCGTCCTCGCAACTCCATGATATCGCCGAAGATTAGTCCTTAG 1074 0.4404 MDIYEPFQQVSMWGDNFKVEGGLNSIASSPMLMVNTSTIENKSEYVPHEPREPSGADQETTDHKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQLQGMCTGNSLDTSFMGSSETINPGIVAFEIEYGNWVDESHRRNNELRSVFQANAPEVQLSQAVRSVLDHYADLFRMKADAAKADVLYLISGVWKASAERLFLWIGGSRPSQLLNIIVPQLELLTDPQMAGIKKLCLCSQQAEDALSQGLDKLQQSLVQDMSVDPFSAVNHGMQMALAIGKFEALEGFVIQADHLRQQTLIHMSRILTTHQAARGLIALGEYFHRLQTLCSIWTSRPRNSMISPKISP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04465 357 MobiDBLite consensus disorder prediction 44 62 - -
Vivi3g04465 357 ProSiteProfiles DOG1 domain profile. 135 345 IPR025422 GO:0006351|GO:0043565
Vivi3g04465 357 Coils Coil 83 110 - -
Vivi3g04465 357 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Vivi3g04465 357 Pfam bZIP transcription factor 64 93 IPR004827 GO:0003700|GO:0006355
Vivi3g04465 357 SUPERFAMILY Leucine zipper domain 64 100 IPR046347 GO:0003700|GO:0006355
Vivi3g04465 357 Pfam Seed dormancy control 154 227 IPR025422 GO:0006351|GO:0043565
Vivi3g04465 357 SMART brlzneu 60 120 IPR004827 GO:0003700|GO:0006355
Vivi3g04465 357 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Vivi3g04465 357 Gene3D - 63 116 - -
Vivi3g04465 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 112 IPR004827 GO:0003700|GO:0006355
Vivi3g04465 357 MobiDBLite consensus disorder prediction 42 62 - -
Vivi3g04465 357 FunFam BZIP family transcription factor 63 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04465 Vivi-Chr3 80368185 80370491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04465 1 347 Calmodulin-binding Proteins AT1G22070 52.589 2.31e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g04465 DOG1 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04465 K14431 - gmx:100775332 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04465 3 80368185 80370491 Vivi3g04465 3 80368185 80370491 ECH
Vivi7g01099 7 57190057 57192697 Vivi3g04465 3 80368185 80370491 PCT