Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04436 ATGGGATGTGTCAATAGCACCTACACCCCCCCTCGAAACCGAAACCGGACCCGACATGTTGACAAGTTCAAAGATCAGTATGCATTCAAACCTATCATCCATAACAAGAATCATCCATCCAAACACGTCCAAGTAAAGCCTAAGAAGAGAGTTGTGATTGTGAATACTAATACTAGTACTAATTCTGGAGCAGGAGAGGGAGAAAGGGTTGATGATAAGATAAATGATGTAGCTAGAGATATCAACGATGATAAGTCTGAGGAGGAAAAGAAGAAAAAGATGAATGCAATCTATGATGTTAAAGTGGAAGAAGATGAGTGGCCCAAATGGCTAGTCGATAATATCTCCCAAAACGTTTTAGCTACCTTGATTCGCAAGACTGCTGATTCCTATGAAAAACTAGGAAAGGTAGGACGTGGAACATATAGCAATGTATATAAAGCTAGAGATAAGGAGAGTGGAAAGATAGTTGCTTTGAAGAAGGTAAGATTTGACACTTCTGATTCTGAAAGCATCAAGTTTATGGCAAGGGAGATTATGATACTGCAGACATTGGATCATCCCAATGTTATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATTTAGTCTTTGAATACATGCAATGTGACCTTACTAGGGTTATCTCACGCCCTACGGAGAGACTCACTGAATCACAGATCAAGTGTTACATGGAACAACTGCTTTTGGGACTTCAATATTGTCATGAGAGAGGAGTCATGCACAGAGATATTAAAGCTTCAAACTTGTTAATAGATAAAGAAGGGGTGTTAAAAATTGCTGATTTTGGGCTTGCAAATTCTTTAAAAATAAAACCTAAAGGACCTCTTACAAATAGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTATAGCATTGATATATGGAGTGTAGGCTGTTTGTTGGCTGAAATGTTTGTTGGAAGACCAATTATGCCTGGGAGGACAGAGATTGAACAGCTTCATATGATATACAAACTATGTGGTTCACCTTCAGAAGATTACTTGACAAAAATGAAGTTAAAGACAAGCTTTCGTCCACCACAACGTTATAAAGCTAGTTTTGAAGAAAACTTTAAGGATTTTCCTTTGCCAGCTCTTAATCTCTTGACTACACTTCTTGATCTTCACTCCCAACATCGTGGCACTGCTGCCTCTGCTCTTCAAACTGAGTTTTTCAAATCCCGTCCATTAGCTTGTGACATTTCAGAATTACCGGTAATAATCAATAAAGGTGATGATGAACGCTCTCAAAAAAAGAGAGGCAAAAGGCGGAAAGGTTTGAAAAAAGGGCAACTATCTAAAAGAAGTGCAAGCAATTTAAGCCTGTCAGGAATGAACCAAGCTGCTGAACAAGGCAAGATAGATTCAGAAACATCAAAGGAGGAGAAGGGTCTAGGACAAAACATGCTAGGACAAGAGCCAGAAACAGGAAATAGTGGAAGCAGCAGAACTTCGTCAATATTTACTAGCGAAAGGAGCCTGAATGCATCTATATCTCCGGTTTTTCTTTCAAGCAGTAAAATATCCCCCAAAACTGAAGGCCATCCTAATGCTCTTAAGAATATAAAAAACTACACACTCCTACAGGCATCTATACTTGATATGATCAACCCAAAAGAAGGCAACGATTTTGGTCAGTTTCGCAGGTCCTTCTCTACATTGGATTTTCGGCTTGATCCTGAGAAGCTATCAAGTCTCTACGGGTCGAAGATGGACCATGAAGTGTGA 1791 0.3914 MGCVNSTYTPPRNRNRTRHVDKFKDQYAFKPIIHNKNHPSKHVQVKPKKRVVIVNTNTSTNSGAGEGERVDDKINDVARDINDDKSEEEKKKKMNAIYDVKVEEDEWPKWLVDNISQNVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKESGKIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQCDLTRVISRPTERLTESQIKCYMEQLLLGLQYCHERGVMHRDIKASNLLIDKEGVLKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSVGCLLAEMFVGRPIMPGRTEIEQLHMIYKLCGSPSEDYLTKMKLKTSFRPPQRYKASFEENFKDFPLPALNLLTTLLDLHSQHRGTAASALQTEFFKSRPLACDISELPVIINKGDDERSQKKRGKRRKGLKKGQLSKRSASNLSLSGMNQAAEQGKIDSETSKEEKGLGQNMLGQEPETGNSGSSRTSSIFTSERSLNASISPVFLSSSKISPKTEGHPNALKNIKNYTLLQASILDMINPKEGNDFGQFRRSFSTLDFRLDPEKLSSLYGSKMDHEV 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04436 596 MobiDBLite consensus disorder prediction 453 474 - -
Vivi3g04436 596 PANTHER CELL DIVISION PROTEIN KINASE 129 418 - -
Vivi3g04436 596 Gene3D Transferase(Phosphotransferase) domain 1 214 452 - -
Vivi3g04436 596 FunFam Mitogen-activated protein kinase 212 428 - -
Vivi3g04436 596 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Vivi3g04436 596 MobiDBLite consensus disorder prediction 492 509 - -
Vivi3g04436 596 SMART serkin_6 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04436 596 SUPERFAMILY Protein kinase-like (PK-like) 125 418 IPR011009 -
Vivi3g04436 596 ProSiteProfiles Protein kinase domain profile. 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04436 596 Gene3D Phosphorylase Kinase; domain 1 119 213 - -
Vivi3g04436 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vivi3g04436 596 MobiDBLite consensus disorder prediction 432 509 - -
Vivi3g04436 596 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Vivi3g04436 596 Pfam Protein kinase domain 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04436 Vivi-Chr3 79910736 79914881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04436 126 470 Core Cell Cycle Gene Families AT5G10270 44.054 1.82e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi3g04436 Pkinase 2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04436 K08819 - gmx:102667260 691.804