Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04428 ATGTTAATGATGTTTCCTGGTCTTAATAGAGAGGGAGAGATGTCAGCTATGATTTCTGCTTTAACTCATGTCATATGTGGTGATGATCACAATCACAACAATGATGGTGGCGGTGGTGAGAATCAGGATATCAAGCCTTTTGTTTCTGCAATACAATCTTCAACTTCTTTGTCTTATGGTGAGAGTTCTTCCCTCAAAAGAAGAAGGGAGGATGGTGGATTTTGTGACAATAAGCATCAAGTTGTGGAATGTTCAAGCGAATGGACGAATACGATAATAACTACGGAAAGGAACCAAAGTGAAGAAACCATATATGAATACAGAACAGACAATAACAACATGCCAAACGAAAATGAGCCAAAGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCTTTCAAAGCTACAAGAGTATGGTTGGGAACATTTGAAACAGCTGAAGATGCAGCCAAAGCCTATGATCAAGCTTCATTGCGGTTTAGAGGAAACAAAGCTAAACTTAATTTCCCCGAAAATGTTAGACTCAAGCAACAGCCTTTTGTTGATCCACCAATGACTCATTTGAGTGGTTCACATTCTAGTACTGATTCAATGGTTCAGAATGAAGCTATTTATACTTTGCAAGGTTCCAATAAGTTTTATGATTATTTTCATGGTCAGAATATACCCATGGCTTATTCTCTTCAGAATTCAATGTGGCTGCCATCAGGTTCAAGTTCTTCTTCTTTTAGTTCTCCACAGACAACTTCTTCAATTCCTTCTGTTTATTCTACTCAGTTGCCACCATGGCCTTCTGGATATAGCTCCTCACCTTCTGGCTGA 852 0.3944 MLMMFPGLNREGEMSAMISALTHVICGDDHNHNNDGGGGENQDIKPFVSAIQSSTSLSYGESSSLKRRREDGGFCDNKHQVVECSSEWTNTIITTERNQSEETIYEYRTDNNNMPNENEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQASLRFRGNKAKLNFPENVRLKQQPFVDPPMTHLSGSHSSTDSMVQNEAIYTLQGSNKFYDYFHGQNIPMAYSLQNSMWLPSGSSSSSFSSPQTTSSIPSVYSTQLPPWPSGYSSSPSG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04428 283 PANTHER DNA-BINDING DOMAIN 86 245 IPR044808 GO:0003700|GO:0009873
Vivi3g04428 283 MobiDBLite consensus disorder prediction 246 283 - -
Vivi3g04428 283 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Vivi3g04428 283 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vivi3g04428 283 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Vivi3g04428 283 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Vivi3g04428 283 Gene3D AP2/ERF domain 122 182 IPR036955 GO:0003700|GO:0006355
Vivi3g04428 283 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Vivi3g04428 283 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Vivi3g04428 283 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Vivi3g04428 283 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04428 Vivi-Chr3 79828915 79830620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04428 111 184 AP2-EREBP Transcription Factor Family AT5G13330 70.667 9.61e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g04428 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04428 - - mtr:11428940 336.265