Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04421 ATGGATAAGATAGCTTTTGCTAGTTTTGGCAGTAAGGCAAAGCCTTATGTGTTAACGGTTGCAGTTCAATTTGGGTTTGCAGGAGCAGTCCTATTCTCCATGGCCAGTTTCAATATTGGAATGAGTCGTTTTGTGTTCATTGTTTATCGTAATATCATTGCTGCAGTTACACTTGCTCCTTTTGCATGGTTTTTTGAAAGGAAAGTTAGGCCAAAGATGACTATCTCAGTCTTTTTGCAGATAATGGCGTTAGCATTTTTGGAGCCAGTGATTGATCAAGGATTCACTTTCTTGGGAATGCAATATACATCAGCTTCATTTACATCTATTTTGTTGAATACTGTGCCTTCTATAACCTTTTTCCTAGCCGTAATTTTCAGGATTGAACAAGTAAATATTAAGCAGATACGAAGCATAGCAAAGGTGATTGGGACATTAGTAACATTTGCAGGGGCATTATTGATGACAATTTACAAAGGCCCACAAATCCACCTTTTTTATTCTCCAAACACATCTCATCATCATGCTGGAAGTCACGATACTCAAACTGTTAAACATTGGGTCTCAGGAACACTCTTTATATTATTGGGTTGTTCCGCTTGGTCATCTTTCTTTATATTACAGTCCATAACGCTGAAAAAATATCCGGCTGAAATGTCATTGTCTACGTTAATTTGCTTCCTTGGTGCTTTGCAAAGTAGCGCGGTGGCATTGGTGGCGGAGCACCACTCGGGTGCGGGGGTTTGGGCTCTTGGTTGGAACTTAAGACTCTATGGCCCTCTCTACACGGGAATAGTTACATCAGGAATAACATATTATGTGCAAGGGTTGGTATTGCAAAGCAGAGGCCCAGTATTTTTCACAGCATTTAATCCTCTATGTATGATCATCACTTGTGCTTTGGGCTCCTTTCTTTTCGGAGAACAACTCCATTTGGGCAGTATCATTGGAGCTGTGATTATTGCAATGGGTCTTTATTTTGTGGTGTGGGGTAAAGCGAAAGACAATTCATCAGCCACAACTACTATGCCACCATCATCAGTTACAATGAAACAAATTGAGACACAACAACTTCCAATTTCTTCATCTGATCATGTGTAA 1101 0.3996 MDKIAFASFGSKAKPYVLTVAVQFGFAGAVLFSMASFNIGMSRFVFIVYRNIIAAVTLAPFAWFFERKVRPKMTISVFLQIMALAFLEPVIDQGFTFLGMQYTSASFTSILLNTVPSITFFLAVIFRIEQVNIKQIRSIAKVIGTLVTFAGALLMTIYKGPQIHLFYSPNTSHHHAGSHDTQTVKHWVSGTLFILLGCSAWSSFFILQSITLKKYPAEMSLSTLICFLGALQSSAVALVAEHHSGAGVWALGWNLRLYGPLYTGIVTSGITYYVQGLVLQSRGPVFFTAFNPLCMIITCALGSFLFGEQLHLGSIIGAVIIAMGLYFVVWGKAKDNSSATTTMPPSSVTMKQIETQQLPISSSDHV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04421 366 Pfam EamA-like transporter family 18 156 IPR000620 GO:0016020
Vivi3g04421 366 Pfam EamA-like transporter family 189 329 IPR000620 GO:0016020
Vivi3g04421 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Vivi3g04421 366 PANTHER WAT1-RELATED PROTEIN 14 340 IPR030184 GO:0016020|GO:0022857
Vivi3g04421 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04421 Vivi-Chr3 79641670 79646352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04421 11 364 Nodulin-like Gene Family AT4G08300 45.787 3.41e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04421 - - gmx:100812537 540.421