Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04420 ATGGATAAAATAGCTTTTGCTAGTTTTGGCAGTAAGGCAAAGCCTTATGTGTTAACAGTGGCAGTTCAACTTGGGTTTGCAGTAGCATCCATATTCGCCTTGGCCAGTTTCAATATTGGAATGAGTCGTTTTGTATTCATTGTTTATCGTAATATCATTGCTGCAATTACTCTTGCACCTTTTGCATGGTTTATAGAAAGGAAAGCTAGGCCAAAGATGACTTTGACTGTCTTTTTGCAGATAATGGCGCTCGCATTTTTGGAGCCAGTGATTGATCAAGGATTCACTTTCTTGGGAATGCAATATACATCCGCTTCATTTACATCTATTCTATATAATAGTGTGCCTTCTATTACCTTTTTCTTAGCCGTAATTTTCAGGATTGAACAAGTAAATATTAAACAGATACGAAGCATAGCAAAGGTGATTGGGACATTAGTAACATTTGCAGGTGCATTATTGATGATAATTTACAAAGGCCCACAAATCCACCTTTTTTATTCTCCAAATAATGCTCATCATCATGCTGGAAGTCACGACACTCAAACTCTCAAACATTGGGTCTCAGGAACACTCTTTTTATTATGTGGTTGTTTCGCTTGGTCATCTTTCTTCATATTACAGTCGATAACGTTGAAAAAGTATCCGGCTGAAATGTCATTGTCTACGTTAATTTGCTTCGTTGGCGCTTTGGAAAGTAGCGCGGTGGCGTTGGTGGCGGAGCATAACTCTGGTATTGGAGTTTGGGCTCTTGGTTGGGACTTTAGACTCTATGGTCCTCTCTACATGGGAGTAGTTACCTCAGGAATAACATATTATGTGCAAGGGTTGGTATTGCAAAGCAGGGGGCCAGTATTTTTCACAGCATTTAATCCTATTTGTATGATCGCCACTTGTGCTTTGGGCTCCTTCCTTTTCGGAGAACAACTCCACTTGGGAAGTATCATTGGAGCTGTGATTATTGCAATAGGTCTTTATTCCGTGGTGTGGGGTAAAGCCAAAGACTATTCATCAGCCACTACTATTATGCCACCATCACCAGTTACAATGAAGCAAATTGAGGCAGAACAGCTTCCAATTACTTCATCTGATCATATGTAA 1101 0.3987 MDKIAFASFGSKAKPYVLTVAVQLGFAVASIFALASFNIGMSRFVFIVYRNIIAAITLAPFAWFIERKARPKMTLTVFLQIMALAFLEPVIDQGFTFLGMQYTSASFTSILYNSVPSITFFLAVIFRIEQVNIKQIRSIAKVIGTLVTFAGALLMIIYKGPQIHLFYSPNNAHHHAGSHDTQTLKHWVSGTLFLLCGCFAWSSFFILQSITLKKYPAEMSLSTLICFVGALESSAVALVAEHNSGIGVWALGWDFRLYGPLYMGVVTSGITYYVQGLVLQSRGPVFFTAFNPICMIATCALGSFLFGEQLHLGSIIGAVIIAIGLYSVVWGKAKDYSSATTIMPPSPVTMKQIEAEQLPITSSDHM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04420 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 159 - -
Vivi3g04420 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 333 - -
Vivi3g04420 366 PANTHER WAT1-RELATED PROTEIN 14 336 IPR030184 GO:0016020|GO:0022857
Vivi3g04420 366 Pfam EamA-like transporter family 189 329 IPR000620 GO:0016020
Vivi3g04420 366 Pfam EamA-like transporter family 17 156 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04420 Vivi-Chr3 79601328 79605105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04420 1 365 Nodulin-like Gene Family AT2G37460 42.740 2.44e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04420 - - gmx:100775669 518.85