Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04409 ATGGCCGATCCCGTCACGGAACTCAGTCCCTCCGGCACCACCGCCACACCGCCGGCCCGTAATGTCCGCCGGAGGTTGGTCCAATCAACGCTCTTCCCTCACAAGGCATCAGAGCCCCGCAATAAACCCGAGGAGAATGGCGACAGTTGTGACGAACAAGATGAGGATTACTGCGAGACGAAGAATCGCAGGAAGAGAAAGTCTAAAGGGAAGGTCACTCCCGCAAATAAAGGCTCCAAGAGTGCCACACCAAAGAAAAATGCATCAGCTAATGGAATTATGGGGTCAACTTCGAGGAATGTTTTGTCTGATTTCGATAAAGTTGATAAAGCTAAGCCTGATTTGCGGTTAGAGGCAAAGTTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGCCGACAAGTTCATCCATTTTTTTCATCATGTAAAGCTGGGAAGAAAGTCCAGGAGCTGTCTGAATCAGGAAGTGATCTATTCAAAGCTAAGAGTGGGGATGAAAGGATTACCTGTGGTCCTATTCATGTATTTGAAAATATCAAGGATGATACCTCATCGGTAGACTGGAGAAACTGGACATTTTTGAGAAATTCCACCCATGTGAATGGAGGATTAGAAAGTTCAAATTCTTCTGTTTATGAGGGTTCTGTTGAATGCTTAAATTTTGATAAGCTTCTTAGTACCTTACATCCATTGGGGGCTTCAAGCTTTCATTCTCAATGTCCAGAAAATCTGCAAGAAACATCATTATCAAACTCAACTTTACAAGAGGAGCAACCAAAAAGTGCTCAGATGCCAAAAAATGCCAAAGTGGACTTGGAGGTGGATGAATCTGATACCTTTTCTGTGCTAGCTGGCTATTTTAGAAAGTCATGTACTGAGCTGTCTAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATGCTGGTTGTGAGGATATACCAGAAGGCAGCTTATGGGCATACAAATACAAGCCAACTAAGGCTGTTGAGGTATGCGGTAATGATGTATCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAATCCCAGGAAGGAGACATCTAATAGGGATTCAAGGGTCATGCAAGATGATGATGATTATATCTGTTCTGACAGTGACTATGATTCAGAAGATATGAACGAAGAGGACTCTCTGCGGAATGTTCTTTTAATTACAGGACCAACAGGGAGTGGCAAGTCCGCAGCAGTCTATGCTTGTGCCAAGGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGAACTGTTGTAAAGCAGTATTTTGGAGATGCCCTTGGTTCACATAGGTTCAAAAGGTTATCAGAACATACTTCGAGTTCACAGAAGATAACTACAAATTTCCCCACAGCTCCTGCTTTGATTAATGATAAAGCTGCGGATGAGGTGAATGCCGGAGTAATTGAACTAATAACCTTATCTGATGATGAAGCTCGTAGCCCATGTAAAACATCCCAAAAGTTACTTGGCAAGAATGAAGCTGTTGCATGTGATAAAGTCCAAACTCTGATTCTTGTTGAGGATGTGGACATACTCTTTCCTGAAGACCGTGGATGTATTGCCGCAATACAGCAGATTGCTGAGACAGCAAGGGGTCCAATTATATTGACCAGCAATAGTGATAATCCTGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCATTCTCATTGCCAACGCCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCGGAGAAGGAACCCCCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCCTGTGATGGAGACATCCGGAAGACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTCAGTAAAGATCTAAAAGCACAGACAGGCTATCCCTCACTTCCATTTGATCTTGAGGGTGGTCATCAGATACTACCAAAGATAATGCCGTGGGATTTCCCTTCAGAGATATCCGAACTAATTGAGAATGAATTTGTCAAATCAGTAAATATAATGGAAGAGAATTGCAGCATGCAAGGGTTAGTTGAAGAAGAGCTTCTTCAAATAAATGAAAGCCAAAATGATTCAGATGAGCAGTATATGGAAACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTAAGAGAAATGGGTCTGTAACAGATTACGGCGAGCTTGAAATTCAATACAATGCTATTTCTGAGTTTCCTAATTCTTCTGAATCTCCTGAAGCATCCTATCTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGAGGAGGATTCAAATAACCGATATCCTCAAGACACAGAGGATGAAGCTAACAAGAGACATTCCATCAAAGAAAATAATGAATGTACCTCTGAGATTCAGTTGAATGAAAACTGCCCCAGCACATCTTTTCGTAAGCTGGTCTGTTCTGAATTGGAGGATTCAGATGAGGAGCGTGATAAATATTCAAAAACAGCTGATGTTAAATGCATAAATGAGACATCTAAGTCATTTGATATATCCTGTGTACCAGAATCATCGATTGTTCCTGAAACTGCTATTGAAAGCGGAGCAGATACAATATCTGGAGCGGTGTCTTCTCGTCACTGTCTAGAAGTTTCTATGAATAATGAGTCGAAACCGTTATCTCTATGTGCTCGGAGGCGGTTAACAAAATTATCACACAATTCAGATATGTTGACTGATGCTGAAATTCCAGATTCTCCAAAAGAGGCTCTACAAGATTTTCTAGATGAAAATATGGAAACTACAATTAATAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAATTAAAGTCAACATTTGTTGAGTCGAGTCCATTATTGGAGACAGATATGGTACAAAGTTTATGGAAAAAGCTCCGACAAATGGATTTAAGACAGCATACTATCTCAGAACAGCTAGGGGCTTCTCAAGTTGTTAAACTTGCTAGTGGGTTGAGCAATCTAATTTCAGAAGCTGATTTGTTTCACAATTACCAACATAAACACGATATTTTGGAGCCCCAGAGCTTTGTTTCTAATGAAGCTACAACTAGTTGTTATAATGACGAAACAATGATGTCCACAGTTGCTGTACATGGGTTTTGTTCTTATGTTAAACTTATAGCAGATGTTGGATCAAAGTTGGGTTGTGTGAACATGATTGATTTAGCTTCTGAGATGCTGGCTTCCACAACTGATACAATGACATTGGGGAAATTATCCAGACATGATCTTGCCAAAAGCACTGTTATTTATAATGGGAAGGAATTAGAGTTGAACAACCCCATAAGTAATGTGAAGAAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGAAAGAATATCCTTAGCAGCACTGAAGGGTGATATCTTCTATGAATATCTATCTTCATTGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCACAATGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTTTTCAACATTATTTGAGCAGATGTACAATGTTGTCCCCTGAAGCTATAACGTTGGTCAGTGATGGTGATTTGTACAAAAAGATTTCTTCACAACATACAACTAACGTGGAAAGTACACCATTATAG 3645 0.4049 MADPVTELSPSGTTATPPARNVRRRLVQSTLFPHKASEPRNKPEENGDSCDEQDEDYCETKNRRKRKSKGKVTPANKGSKSATPKKNASANGIMGSTSRNVLSDFDKVDKAKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSESGSDLFKAKSGDERITCGPIHVFENIKDDTSSVDWRNWTFLRNSTHVNGGLESSNSSVYEGSVECLNFDKLLSTLHPLGASSFHSQCPENLQETSLSNSTLQEEQPKSAQMPKNAKVDLEVDESDTFSVLAGYFRKSCTELSSRFLQESLRSYYAGCEDIPEGSLWAYKYKPTKAVEVCGNDVSVNFLSDWLHQWHERRYNPRKETSNRDSRVMQDDDDYICSDSDYDSEDMNEEDSLRNVLLITGPTGSGKSAAVYACAKEQGFDILELNASDCRNGTVVKQYFGDALGSHRFKRLSEHTSSSQKITTNFPTAPALINDKAADEVNAGVIELITLSDDEARSPCKTSQKLLGKNEAVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLHVSFSLPTPKELLCHLYSVCLGEGTPIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFSKDLKAQTGYPSLPFDLEGGHQILPKIMPWDFPSEISELIENEFVKSVNIMEENCSMQGLVEEELLQINESQNDSDEQYMETDYIKAKKVEMIKRNGSVTDYGELEIQYNAISEFPNSSESPEASYLQNGRRKLVVMSSDSEEEDSNNRYPQDTEDEANKRHSIKENNECTSEIQLNENCPSTSFRKLVCSELEDSDEERDKYSKTADVKCINETSKSFDISCVPESSIVPETAIESGADTISGAVSSRHCLEVSMNNESKPLSLCARRRLTKLSHNSDMLTDAEIPDSPKEALQDFLDENMETTINKVMDECSRVDFKLKSTFVESSPLLETDMVQSLWKKLRQMDLRQHTISEQLGASQVVKLASGLSNLISEADLFHNYQHKHDILEPQSFVSNEATTSCYNDETMMSTVAVHGFCSYVKLIADVGSKLGCVNMIDLASEMLASTTDTMTLGKLSRHDLAKSTVIYNGKELELNNPISNVKKSENKASLFEVVQSIVPERISLAALKGDIFYEYLSSLRQISRSEAVRVSQCVEKKRRGRSRGFQHYLSRCTMLSPEAITLVSDGDLYKKISSQHTTNVESTPL 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04409 1214 Gene3D - 575 638 - -
Vivi3g04409 1214 MobiDBLite consensus disorder prediction 74 98 - -
Vivi3g04409 1214 MobiDBLite consensus disorder prediction 764 788 - -
Vivi3g04409 1214 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 1204 IPR004582 GO:0006281
Vivi3g04409 1214 MobiDBLite consensus disorder prediction 1 98 - -
Vivi3g04409 1214 MobiDBLite consensus disorder prediction 247 262 - -
Vivi3g04409 1214 Gene3D - 316 569 IPR027417 -
Vivi3g04409 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 623 IPR027417 -
Vivi3g04409 1214 SMART AAA_5 391 580 IPR003593 GO:0016887
Vivi3g04409 1214 MobiDBLite consensus disorder prediction 247 267 - -
Vivi3g04409 1214 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 577 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04409 Vivi-Chr3 79345471 79355850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04409 309 620 Core DNA Replication Machinery Family AT5G22010 22.462 1.40e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04409 K26118 - gmx:100784209 1514.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04409 3 79345471 79355850 Vivi3g04409 3 79345471 79355850 ECH