Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04352 ATGGCGCCACCGAAAAAAAGGAATTTACATCAATGGAAGCATCCATTTGATTCTGATTATCCATTTGAAGCAGTATTGTCTGGCTCATGGCAACCTGTGAAACTCATCGAAGTTTCGTCAGGAAAAACCACCTTACATTTCATGGATACTCGACAGATTCAAACTCCTTTGACATCGTCATCTGATATTCGGATAGGATCAAGAAAAGCTACTTCATCCGATTGCTCCAACTTTCTTCGATCTGGAATCGACATATCTATTCTAATAGGCTTTTGCCACCATGATGATAATTCATATCAATTTAGTCCTATTCCAATGTGGATTGATGCTAGGATAAATTCCATACACAGACAACCTCACGACGAATCTGATAAATGTTCGTGTCAATTTTATGTAAACTTCTACGATGATCAAGGTTCACTTGGAACCGAGATGAAAACTCTAAGTAAAGAGGATACCGCGATTGGAATAGACCAAATCTTCATCCTCCAGAGGCTTCAACATAATACTTCTGAAGGCTTGTTAAAAGAAAGTAATGTTTGCGAAGTTAAGCCTTATAGGTGGGATTCATCGGAAGATTGCTCTTCGTTATCCCAAACTAGATTAATTCTCGGGAAGTTTTTATCTGATCTTTCATGGTTTGTTATGACGTCATTTTTAAAGAAGGTTTCGTTTAGTATAAGATCTTTTCAGAACAAGCTTGTATATCAAGTTATGGGAAATGATACCGATGTTACTAGTCCTTTTTTGATAGATGTTGTGAACTTCGAACTTAAAAATGGATCGCTAGTACCTATTATTTCTCAATTTGACGCGTTTCATGATTATGATGGTGAAGAAGATGAAGCGTCGCCAATGCAAACTAATGAAATTGGAGGCTTACGACGCTCAAGACGTAGAAATGTACAGCCCGAACGGTACATTGGTTGTGCTGTTGAGAAGTTGGCAGTTGGTAACTTTAGAACCTGGCCATACAAGAGAGGAACTTATGTGAAAAGAAACGATAACTCTTCTTCAGATTCAGATTCAGATTCAGATTCAGAATCAGAAGAGGACGATAGTGAAAGTGACGAAAAGGTTAATGAGGCGGAAAAGACCAATGAAGTAAAGTTAGGTGATGCCGAAAAAAATGATCATGGAGATGATATTTCTTCGAAATATGATCATTTGACTAATGACATCGTTGAAGCAAAGAATAATGGTGCTGACGTGTTGAATTCGGATCCCTGCAATGATCAGTCTGCAATATCATGTGTTAAAGAAGTCGATGATAATGCTACTTTGGGACGTTATTATAGTTATTGCAGAGAAAAAAACCTCAAGAGGAAGCAATTTGATCATGATTTGGATGATATCGATTTTGGAAACAAATGGGAAGGGATCTGTTTTAAAAACGGCGCTCAAACAAAACGATTTCGTTGGACAAACATAAGCCAGGTTCACGACGAACAGCGTCATAAAGGAAGTAGAATGCACGCCGATGCCTCCAAAGAAATAATCGATACATATATGAAGAATTTCGATAGTCTGCCAACCGAAGAAGAGAAAAACGTTAACGAGCCGTGGCAGGAAACAAGCAAGTTGGAGCCGAAGGAAGAAGAAAACACATCGAAAAGCGATGACGAGGAGGAAGAGAGTCCTGAGAATTTGGAGGCCTTATGGCAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTATTGGGAATGAGGACTCAAATGCTGCTGAGGTTTCGGCTGATACCGAGAAAGAATCAAAGGAAACATGTGAACATGATTTTAGATTGGAAGACGAAATTGGAATATACTGCACCCGATGTGGTTTTGTGAAAACCGCAATACGAGACATTTCTGAACCCATTATGGAAAATCCAAAATGGCACAAAGAGGAGAGACAATGCAGTGGAGAAGATAAGGAAGACAAACCCGAGCCAAAAGTCGAAGAAGTTGATAATAAGGATCTGTTCTTGACTCGTGCTAATGATCTCGATGAGCCAATATCAACAGAAAATGAAAATGTTTGGGAATTGATTCCAGAACTCAAAGAACAGATGCATGCACACCAGAAAAAAGCTTTTGAGTTTCTTTGGCGAAACATTGCAGGATCAATGCAACCAGCTCTCATGAAAGAAAACTCCGAAACAAGTGGTGGCTGTGTTATATCTCATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCGTTTCTCGTAAGTTACTTGAAACTATTTCCAGGGAAAAGACCATTAGTCCTAGCTCCGAAAACCACACTCTACACATGGCGAAAAGAGTTCAAGAAATGGAAGATTCCTGTGCCGGTGTACCTTATTCACGCCCGTCAATCCTCGAGAGATTTAACGACACTAAAATCAACGATTCTTCCGGGAGTTCCAAAACCTACTAGTGGTGTCAAACATGTTTTGGATTGTATCAACAAGATACAGAAATGGAACTCACACCCGAGTGTTCTTGTCATGGGCTATACTTCGTTTTTTTCGCTAATGAGATCGGAAGAAACGAAATTCGAACACAGAAAATACATGGCTAAAGCATTGAGAGAAAACCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACGAAATCGAGGTTGAGGAAATGTTTAATGAAAGTTCCAACAGAATTGAGGATATTACTTTCAGGCACATTGTTTCAGAACAATTTCTGCGAATATTTCAATACGCTTTCTTTAGCTAGACCAAAATTCGTGCACGAAGTTCTACATGAGTTGGACTCTAAATACAGAAGGAATGGAGAAATTATGAAGAAAGCACCGCATTTACTCGAGGCGAGAGCGAGGAAATTCTTCTTGGATAACATTGAAAAGAAGATTAACTCGGATATTGACGAGGAAAAAATGTTCGGTCTAAACCTGCTGCGGAAAATGACAACCGGATTCATTGATGTTTATGACAGTGGGAATTCTTCTGATACACTTCCTGGTTTACAAATCTATACATTGCTCATGAACACGAACGATGAACAACACGAGATCATACAGAAGCTTCAGAAGAAAATGGCTAAGTCCAGTAGTTACCTTCTCGAGGTTGAACTTCTGATAACACTCGGATCGATACATCCTTGGTTGATCAAAACAGCAGCAGCATGTGCAGCTAAGTTTTTCACCGACGAAGAACTGAAGAAGCTAGAAACAAGCAAATTCGATTTGAGAAAAGGCTCCAAAGTAAGATTTGTCCTGAGCCTAATCTCGCGCGTAGTGAAAAACGAAAAGGTTCTTATCTTTTGTCACAACCTCGCACCAATAAGGTTTTTAATCGAGTTATTCGAGAAATATTTCCAGTGGCAAAACGGTAAAGAGGTTCTGCTACTAACCGGGGAGCTAGACTTGTTTGAAAGAGGCAAAGTGATAGACAAATTCGAAGATCCTCGTGGAAGTTCGAAGGTACTTCTTGCTTCTATCAATGCTTGTGCTGAAGGTATAAGCTTAACAGCAGCTTCTAGGGTGATATTTTTGGATTCTGAATGGAATCCTTCTAAAACAAAGCAAGCTATCGCGCGTGCTTTTCGTCCGGGGCAGCAGAAAATGGTGTACGTTTATCAGTTATTGACAACCGGATCGATGGAGGAAGATAAGTTTAGAAGGACTATATGGAAAGAGTGGATTTCTTGCATGATTTTCAGTCAAGAGTTCGTTGAAAACCCTTCGAAATGGCAAACTGAAAAGATAGAAGATGATATACTGAGGGAAATGGTTGAAGAAGATAAGTCTAAAGCAATTCATATGATTATGAAAAATGAAAAGGCTTCAACAACCTAA 3807 0.393 MAPPKKRNLHQWKHPFDSDYPFEAVLSGSWQPVKLIEVSSGKTTLHFMDTRQIQTPLTSSSDIRIGSRKATSSDCSNFLRSGIDISILIGFCHHDDNSYQFSPIPMWIDARINSIHRQPHDESDKCSCQFYVNFYDDQGSLGTEMKTLSKEDTAIGIDQIFILQRLQHNTSEGLLKESNVCEVKPYRWDSSEDCSSLSQTRLILGKFLSDLSWFVMTSFLKKVSFSIRSFQNKLVYQVMGNDTDVTSPFLIDVVNFELKNGSLVPIISQFDAFHDYDGEEDEASPMQTNEIGGLRRSRRRNVQPERYIGCAVEKLAVGNFRTWPYKRGTYVKRNDNSSSDSDSDSDSESEEDDSESDEKVNEAEKTNEVKLGDAEKNDHGDDISSKYDHLTNDIVEAKNNGADVLNSDPCNDQSAISCVKEVDDNATLGRYYSYCREKNLKRKQFDHDLDDIDFGNKWEGICFKNGAQTKRFRWTNISQVHDEQRHKGSRMHADASKEIIDTYMKNFDSLPTEEEKNVNEPWQETSKLEPKEEENTSKSDDEEEESPENLEALWQEMNTALTSSYLLIGNEDSNAAEVSADTEKESKETCEHDFRLEDEIGIYCTRCGFVKTAIRDISEPIMENPKWHKEERQCSGEDKEDKPEPKVEEVDNKDLFLTRANDLDEPISTENENVWELIPELKEQMHAHQKKAFEFLWRNIAGSMQPALMKENSETSGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHARQSSRDLTTLKSTILPGVPKPTSGVKHVLDCINKIQKWNSHPSVLVMGYTSFFSLMRSEETKFEHRKYMAKALRENPGILILDEGHNPRSTKSRLRKCLMKVPTELRILLSGTLFQNNFCEYFNTLSLARPKFVHEVLHELDSKYRRNGEIMKKAPHLLEARARKFFLDNIEKKINSDIDEEKMFGLNLLRKMTTGFIDVYDSGNSSDTLPGLQIYTLLMNTNDEQHEIIQKLQKKMAKSSSYLLEVELLITLGSIHPWLIKTAAACAAKFFTDEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPIRFLIELFEKYFQWQNGKEVLLLTGELDLFERGKVIDKFEDPRGSSKVLLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKFRRTIWKEWISCMIFSQEFVENPSKWQTEKIEDDILREMVEEDKSKAIHMIMKNEKASTT 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04352 1268 Gene3D - 990 1268 IPR027417 -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 510 535 - -
Vivi3g04352 1268 Gene3D - 657 947 IPR038718 -
Vivi3g04352 1268 Pfam Helicase conserved C-terminal domain 1071 1187 IPR001650 -
Vivi3g04352 1268 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 59 1267 IPR044567 GO:0080188
Vivi3g04352 1268 SMART helicmild6 1103 1188 IPR001650 -
Vivi3g04352 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 924 IPR027417 -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 359 385 - -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 278 297 - -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 510 548 - -
Vivi3g04352 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1252 IPR027417 -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 624 648 - -
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 341 358 - -
Vivi3g04352 1268 SMART ultradead3 681 919 IPR014001 -
Vivi3g04352 1268 CDD SF2_C_SNF 1070 1199 - -
Vivi3g04352 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 710 911 IPR014001 -
Vivi3g04352 1268 Pfam SNF2-related domain 690 959 IPR000330 GO:0005524|GO:0140658
Vivi3g04352 1268 MobiDBLite consensus disorder prediction 331 385 - -
Vivi3g04352 1268 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1074 1235 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04352 Vivi-Chr3 78335939 78341445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04352 1085 1206 RAD5 or RAD16-like Gene Family AT5G05130 35.772 3.97e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi3g04352 SNF2_N 1.5e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04352 K10875 - gmx:100811703 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04352 3 78335939 78341445 Vivi3g04352 3 78335939 78341445 ECH
Vivi3g04352 3 78335939 78341445 Vivi7g02201 7 84805329 84811429 PCT