Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04347 ATGGCCATGGAACCCGAGTTCCCCAACAAAGCTTTAACAAGCACTCGCTTTTCCGACCTCAAACCCCCACTTTCCGATCCCGTACTCCAAGCCCTCACAGACTCCGCCTTCGATTTCTGTACCCCCGTTCAAGCCGCCACCATCCCCTTACTCTGCAGCTTCAAAGACGTCGCCGTCGACGCCGCCACCGGTTCAGGCAAAACCCTAGCTTTCGTTATCCCACTTGTCGAAATTCTTCGTCGCTCCTCCTCCAATCCCAAACCTCACCAGGTTTTGGGGATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATTTATCATGTTGCACAACCTTTTATTTCAACCTTACCCAATGTTAAGTCAATGCTACTAGTAGGTGGAGTGGAAGTTAAAACTGACATGCAGAAAATTGAGGAAGAAGGTGCTAATGTATTGATTGGCACCCCGGGTCGATTGCACGACATTATGAATCGGATGGATGTTATGGATTTCAAAAGTTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTCAGTTACCTAAGCTTAGAAGGACTGGCTTATTTTCCGCTACTCAAACTGAAGCTGTGCAAGAGCTTGCTAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCGGAAACTAAAACTGCAAATGGTGGTGCAGCATCAACACAGCTAGAATCTTCAAAGACACCTTCAGGTCTTCACATCGAGTACTTGGAATGTGAGGCTGATAAGAAACCGTCGCAGCTAGTAGATTTCCTTATTAAGAACCGCTCGAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATTTCCCTTCATGGAAAGATGAAGCAGACTGTGAGGGAGAAGGCACTATCTTCATTTACATCCCTCTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGCGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATAGGGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTTATCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATAAGAAGAATTCCACTTCAAGAAAGATCAAGCTCCGACAATGCACCTGATGTTATATCCGAGATTCGTTCTGCGGCAACAAAAGATCGCGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAGATCGGCAAGTTAGCCACCGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGGTAAAACGCCACTCACTATCCATTGAGGGATTTGAACCTGTTAAAGATATCAATTTCGAGGACATTAAGTTCAGGGATAAATCAAGGGAGAAACAAAGAAAGAAAAATCTGCAAACAAAGAAAGAAGCAAAAGAGAAAGAGCCTAAACCTAAAAAGCTAAAGAAAACTCCCAATGTACCCGATGTCATGAGGAAGAAAACAGCCAAACAGAGACGTGCCCAGCAGACTGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGGTCATTGATGAGGATGAATATGCCAAGTTGACGGGCACAGAAGACTTACTTTGA 1776 0.4352 MAMEPEFPNKALTSTRFSDLKPPLSDPVLQALTDSAFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSNPKPHQVLGIIISPTRELASQIYHVAQPFISTLPNVKSMLLVGGVEVKTDMQKIEEEGANVLIGTPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTEAVQELAKAGLRNPVRVEVRAETKTANGGAASTQLESSKTPSGLHIEYLECEADKKPSQLVDFLIKNRSKKIIIYFMTCACVDYWGVVLPRLSVLKGFSLISLHGKMKQTVREKALSSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVIFLLPKEESYVEFLRIRRIPLQERSSSDNAPDVISEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEVKRHSLSIEGFEPVKDINFEDIKFRDKSREKQRKKNLQTKKEAKEKEPKPKKLKKTPNVPDVMRKKTAKQRRAQQTVEDEEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04347 591 Gene3D - 256 476 IPR027417 -
Vivi3g04347 591 CDD SF2_C_DEAD 256 386 - -
Vivi3g04347 591 FunFam RNA helicase 11 229 - -
Vivi3g04347 591 Pfam DEAD/DEAH box helicase 41 215 IPR011545 GO:0003676|GO:0005524
Vivi3g04347 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 226 IPR014001 -
Vivi3g04347 591 Pfam Helicase conserved C-terminal domain 265 377 IPR001650 -
Vivi3g04347 591 SMART ultradead3 36 236 IPR014001 -
Vivi3g04347 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 421 IPR001650 -
Vivi3g04347 591 Coils Coil 541 561 - -
Vivi3g04347 591 PANTHER RNA HELICASE 13 522 - -
Vivi3g04347 591 SMART DUF4217_3 415 478 IPR025313 -
Vivi3g04347 591 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 172 180 IPR000629 -
Vivi3g04347 591 Pfam Domain of unknown function (DUF4217) 418 474 IPR025313 -
Vivi3g04347 591 SMART helicmild6 292 377 IPR001650 -
Vivi3g04347 591 Coils Coil 505 525 - -
Vivi3g04347 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 396 IPR027417 -
Vivi3g04347 591 Gene3D - 4 229 IPR027417 -
Vivi3g04347 591 MobiDBLite consensus disorder prediction 506 560 - -
Vivi3g04347 591 CDD DEADc_DDX55 28 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04347 Vivi-Chr3 78237021 78242041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04347 15 386 Eukaryotic Initiation Factors Gene Family AT3G19760 29.223 2.99e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04347 K14809 - gmx:100801482 994.186