Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04345 ATGGGTGGTAATTCTCATTCCCCTTGTGCTTCATGCAAGCTCCTTAGACGCCGTTGTGCTAAGGACTGTATCTTTGCTCCTTATTTCCCTTCCCATGATCCTCAAAAGTTTGCTATAGTTCACAAGGTTTTTGGTGCCAGCAACGTCAGCAAAATACTCCAGGAACTTCCTGTTGAACAAAGAACCGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAGTGAAAGATCCTGTTTATGGTTGTGTTGGAGCCATATCTTATCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCACAAGCAGAGATAGTCTGCATCCAGATGCAACATCATGATAATGAGCCTGTAATGCAAATTCCAGAAACGGGAATGGCCCTTGATCATAACTTTCCTTCTTCAAGCTATGTAATTCATCATGATTCAAGAGAGAGTGTTTTTGAATTTTGA 462 0.4134 MGGNSHSPCASCKLLRRRCAKDCIFAPYFPSHDPQKFAIVHKVFGASNVSKILQELPVEQRTDAVSSLVYEAHARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEIVCIQMQHHDNEPVMQIPETGMALDHNFPSSSYVIHHDSRESVFEF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04345 153 Coils Coil 87 107 - -
Vivi3g04345 153 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vivi3g04345 153 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vivi3g04345 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04345 Vivi-Chr3 78218714 78219280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04345 1 134 AS2 family AT2G30130 78.358 2.43e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g04345 LOB 4.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04345 - - pop:7462094 224.557