Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04330 ATGAGAGGCACGAAGGGTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAATTACTAAAAAGAAGATGCACACCAAACTGCCTATTTGCACCATACTTCCATTCAAACGAGTGCAAGAAATTCGCCAAAGTCCACAAAGTATTTGGAGCAAGCAATGTTAGCAAAATACTCATCGAAGTCCCCGAAAAGCAGCGAGAAGACACAGTGAATTCTCTGGCTTATGAAGCAGAGGCAAGACTTAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTTTGTTGCAGAGAAAGATGATGGAACTTCAACATGATCTGGACATTGCTAAAGATCGTCTTGCTCACTGTCGCGCTCTTGCTGCCACTGCTACTGCTACAACCACCGCGACTATTCCTTCGGTCGATAGTGTTACTTTGCCTCCGTTTCCGGAGTTTTCAACTTGTAATGATCTCAGTGATATCTTCTGTCATGGCTCTTCTTCTCAATTATCGACCCGGCTTGAAACCGTCGACGATTTTAATCAAATTCCATATATCTTTTGA 546 0.4396 MRGTKGYEPRSSSSCAACKLLKRRCTPNCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLDIAKDRLAHCRALAATATATTTATIPSVDSVTLPPFPEFSTCNDLSDIFCHGSSSQLSTRLETVDDFNQIPYIF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04330 181 Coils Coil 93 113 - -
Vivi3g04330 181 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Vivi3g04330 181 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Vivi3g04330 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04330 Vivi-Chr3 77895906 77896672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04330 5 180 AS2 family AT3G11090 56.983 9.13e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g04330 LOB 7.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04330 - - gmx:100305534 280.411