Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04319 ATGGAAAGCAAATTTCAAACCTCAGTTTTACTTGAGTTGTCAGCAACAGATGATATTGAAGCTTTCAAAATTGAAGTAGAACAAAAGGGTTGTGATGTAAACGAGGCAGGGTTTTGGTATTGTAGAAAAATTGGATCAAAGAACATGTGTTACGAAAAGAGAACACCCCTTATGGTTGCTTCTTTGTTTGGAAGCACTAGGGTTGTCAAATATATCATTCAAACTAACATGGTTGATGTCAACAAGCAAACTGGTTCTGAAAATGTCACTGCTTTACATTGTGCTATTGCTGGTGGCTCTGAATCAACCCAAGAGATTGTCAAGCTCTTAATTGATGCTGGAGCTGATGTTGATGATTGTCTTGATGAAATAATTAAGCAGAAATTTCCTGTGCTTAATTCAAAAGAATTATTAGGCAGTGAGAAGAAAGAGTATCCTATTGATATATCATTGCCTGATATAAACAATGGTGTTTTTGGAACGGATGAGTTTAGAATGTATAGTTTCAAGGTCAAGACTTGCTCAAGGGGTTACTCTCATGATTGGACTCAGTGTCCATTTGTTCATCCTGGTGAGAATGCTAGAAGGAGAGATCCAAAGAAGTACCTTTATAGCTGTGTTCCGTGCCCCGAGTTTCGCAAGGGGACATGCCAGAACAAAGATGCATGTGAATATTCACATGGTGTTTTTGAGTCCTTGCTCCATCCTTTACAATACAGGACAAGGCTTTGTAAAGATGAGATAAGATGTTCAAGAAAAGTGTGTTTCTTTGCTCACAAACACGAAGAGTTGAGGCCTTTGTATGCTTCTACTGGTTCAGCTATGCCTTCACAAGAGTCTTTACCAACTTCAAATGTTTCAACTCCCAAAAGTGAAAACTTGTGGCAGAATGAAGTCAACCTTACCCCACCTTCCTTGCAGCTTCCTAATAGGGAGCTGAAAAGTGCTTTGAGTGCAAGAGATTTGTATCATGAAACGGACCTGTTACATAGCGTTTCTATGCAACCATCAACTCCTTCTCAATTACAATCTATGAGTAGGCTTCAGTTGAACCAAAACAGGAACCATGTTCAAGCAAGTTATCCTTTCAACAACTTTGCTTCCCCTCCTGCAAGAAAATCATCAGCTTTTGGATTTGATTCATCTGCTGCTATGGCTGCAGCAGTGATGAACTCAAGATCTTCAGCCTTTGCGACACGAAGCCAAAGTTTTATGGACCGTAGTGTGGCACGACACCATATCAGTGCTTCTGAATACAACCGAAGGATGAACTACGGATTGTCTGACTGCATTTCACATGATGGGGATGATCCGAACAAATTCAAAAAATCTGCTTCTTTTGGGTTTAGGAATACTATGGTAGGTGTGTCACAGCCAGAATATGTTGAACCGGACGTCTCTTGGGTTCATTCTTTGGTTTCTTCTGAAAGTTCTGAGATATTTGGTGCTGAGAAGCAGCATTATGGTCTCTATAAACAAATGTCATCACCATGGGCAGAACAGATTGTAGCATAA 1515 0.4 MESKFQTSVLLELSATDDIEAFKIEVEQKGCDVNEAGFWYCRKIGSKNMCYEKRTPLMVASLFGSTRVVKYIIQTNMVDVNKQTGSENVTALHCAIAGGSESTQEIVKLLIDAGADVDDCLDEIIKQKFPVLNSKELLGSEKKEYPIDISLPDINNGVFGTDEFRMYSFKVKTCSRGYSHDWTQCPFVHPGENARRRDPKKYLYSCVPCPEFRKGTCQNKDACEYSHGVFESLLHPLQYRTRLCKDEIRCSRKVCFFAHKHEELRPLYASTGSAMPSQESLPTSNVSTPKSENLWQNEVNLTPPSLQLPNRELKSALSARDLYHETDLLHSVSMQPSTPSQLQSMSRLQLNQNRNHVQASYPFNNFASPPARKSSAFGFDSSAAMAAAVMNSRSSAFATRSQSFMDRSVARHHISASEYNRRMNYGLSDCISHDGDDPNKFKKSASFGFRNTMVGVSQPEYVEPDVSWVHSLVSSESSEIFGAEKQHYGLYKQMSSPWAEQIVA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04319 504 SUPERFAMILY Ankyrin repeat 7 118 IPR036770 -
Vivi3g04319 504 ProSiteProfiles Ankyrin repeat region circular profile. 87 118 - -
Vivi3g04319 504 SMART ANK_2a 52 82 IPR002110 GO:0005515
Vivi3g04319 504 SMART ANK_2a 87 119 IPR002110 GO:0005515
Vivi3g04319 504 Gene3D - 3 129 IPR036770 -
Vivi3g04319 504 Pfam Ankyrin repeats (3 copies) 29 118 IPR002110 GO:0005515
Vivi3g04319 504 Gene3D - 205 266 - -
Vivi3g04319 504 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Vivi3g04319 504 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Vivi3g04319 504 ProSiteProfiles Ankyrin repeat profile. 87 118 IPR002110 GO:0005515
Vivi3g04319 504 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Vivi3g04319 504 PANTHER UNKEMPT FAMILY MEMBER 12 474 IPR045234 -
Vivi3g04319 504 FunFam Zinc finger CCCH domain-containing protein 66 161 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04319 Vivi-Chr3 77564751 77566682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04319 138 335 C2H2 Transcription Factor Family AT5G12850 52.564 1.85e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04319 Ank_2 1.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04319 - - tpra:123894788 743.036