Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04318 ATGGAAAGCAAGTTCCAAATTTCAGTTTTACTTGAATTATCAGCAACAGATGATATTGAAGCTTTCAAAATTGAAGTAGAACAAAAGGGTTGTGATGTAAACGAGGCTGGGTTTTGGTATTGTAGACAAATTGGATCAAAGAACATGTGTTATGAAAAGAGAACACCCCTTATGGTTGCTTCTTTGTTTGGAAGCACTAGGGTTGTCAAATATATCATTCAAACTAACATGGTTGATGTCAACAAGCAAACCGGTTCTGAAAATGTCACTGCTTTACATTGTGCTCTTGCTGGTGGCTCTGAATCAACCCTTGAAATTGTTAAGCTTTTGGTTGATGCTGGAGCTGATGTTGATTGTCTTGACGAATCAATTAAGCAGAAACTTTCAGTGGCTAATTCAAAAGAATTAGTAGGCAGTGAGAAGAAAGAGTATCCAATTGATATAACATTGCCTGATATAAACAATGGTGTTTTTGGAACGGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGCTCAAGGAGTTACTCTCATGATTGGACTCAGTGTCCATTTGTTCATCCAGGTGAGAATGCTAGAAGGAGGGATCCAAAAAAGTATCTTTATAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGACATGCCAAAACAAAGATGCCTGCGAGTATTCACATGGTGTTTTTGAGTCCTTGCTCCATCCTTTACAATACAGAACGAGACTTTGCAAAGACGAGGTAAGATGTTCAAGAAAAGTGTGTTTCTTTGCACACAAACATGAAGAGTTGAGGCCTTTGTATGCTTCTACTGGTTCTGCTATGCCTTCACAAGAGTCTTTACCAATTTCAAATGTTTCAACACCGCATATGTCTCCATTGGTAGCAGCTTCATCTCCTAACAGTGGAAACTTGTGGCAGAATGAAATCAACCTTACTCCTAATAGGCAGCTGAAAAGTGCTTTGAGTGCAAGAGATTTGTATCAAGAAATGGACCGGTTACATAGCGCTTCTATGCAACCATTAACTCCTTCTCAATTACAATCTATGAGTAGGCTTCAGTTGAATCAAAACAGGAACCATGTTCAAGCAAGTTATCCTATCAACAACTTTGTTTCCTCTCCTGTAAGAAAATCATCAGCTTTAGGATTTGATTCATCTGCTGCTATGGCTGCCGCAGTGATGAATTCAAGATCTTCAGCTTTTGCAACGCGAAGCCAAAGTTTTATGGACCGCGGTGTGGCAAGACACCATATCAGTGCTTCTGAATCCTACAGAAGGATGAACAATGGATTTTCTGACTGGATTTCTCAAGATAGGGATGATCTGAACAAGTTAAAAAAATCTGCTACTTTTGGGGTTAGAAATACTATGGCATGTTTGTCACAGCCAGAATGTGTTGAACCGGATGTCTCTTGGGTTCATTCTTTGGTTTCTTCTGAGAGTTCTGAGATATTTGGTGCTGAGAAGCAGCATTATAATCTCTATAAACTTATGTCATCACCATGGGCAGAGCAGATTGTAGCATAA 1527 0.3942 MESKFQISVLLELSATDDIEAFKIEVEQKGCDVNEAGFWYCRQIGSKNMCYEKRTPLMVASLFGSTRVVKYIIQTNMVDVNKQTGSENVTALHCALAGGSESTLEIVKLLVDAGADVDCLDESIKQKLSVANSKELVGSEKKEYPIDITLPDINNGVFGTDEFRMYSFKVKTCSRSYSHDWTQCPFVHPGENARRRDPKKYLYSCVPCPEFRKGTCQNKDACEYSHGVFESLLHPLQYRTRLCKDEVRCSRKVCFFAHKHEELRPLYASTGSAMPSQESLPISNVSTPHMSPLVAASSPNSGNLWQNEINLTPNRQLKSALSARDLYQEMDRLHSASMQPLTPSQLQSMSRLQLNQNRNHVQASYPINNFVSSPVRKSSALGFDSSAAMAAAVMNSRSSAFATRSQSFMDRGVARHHISASESYRRMNNGFSDWISQDRDDLNKLKKSATFGVRNTMACLSQPECVEPDVSWVHSLVSSESSEIFGAEKQHYNLYKLMSSPWAEQIVA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04318 508 Gene3D - 92 138 IPR036770 -
Vivi3g04318 508 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Vivi3g04318 508 SMART ANK_2a 52 82 IPR002110 GO:0005515
Vivi3g04318 508 SMART ANK_2a 87 119 IPR002110 GO:0005515
Vivi3g04318 508 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Vivi3g04318 508 Gene3D - 2 91 IPR036770 -
Vivi3g04318 508 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Vivi3g04318 508 Gene3D - 203 265 - -
Vivi3g04318 508 PANTHER UNKEMPT FAMILY MEMBER 12 478 IPR045234 -
Vivi3g04318 508 SUPERFAMILY Ankyrin repeat 7 126 IPR036770 -
Vivi3g04318 508 Pfam Ankyrin repeats (3 copies) 26 119 IPR002110 GO:0005515
Vivi3g04318 508 SMART c3hfinal6 237 260 IPR000571 GO:0046872
Vivi3g04318 508 SMART c3hfinal6 202 228 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04318 Vivi-Chr3 77517268 77518924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04318 138 486 C2H2 Transcription Factor Family AT5G12850 38.776 4.20e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04318 Ank_2 6.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04318 - - tpra:123894788 753.436