Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04310 ATGGATGATTCCAGAGAGCTGTTTCCCATCGGAATGCGTATTCTTGCAGTTGACCATGATCCCTCTAGCCTTCAAGTTTTAGAAACTCTTCTCCAAACATATCAATACCATGTAACCACGACTAATCAAGCAATAACGGCATTGGCTATGTTGCAAGAAAACCAAGACAACTTTGACCTGGTAATCATTGATGTGAACATACCAGACATGGATGCATTTAAGTTTCTTGAACTTGTAGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGTATGCGGTGATACAAATCTGCTGATGAAAGGAATTTCCCACGGTGCATGTGATTATCTGCTAAAACCTGTGAGATTAGAGGAGCTAAGGAACATTTGGCAGCATGTAGTTAGGAGGAACAGGTCCGGAGTTGTTTGGTCTGTCGAGTTGCATCGCAATTTTGTCGCTGCTATTAATCACCTAGGCATTGACAAGGCTGTACCCAAAAAAGTTCTGGATACGATGAATGTCGAAAATATTACAAGGGAGAACGTAGCTAGTCATCTCCAGAAGTATAGACCTTATCTGAAAAGAATTAGCTGTGTTACAAACCAACAAGCTAGTATGGTGCCAAGTATTTTCTGA 618 0.411 MDDSRELFPIGMRILAVDHDPSSLQVLETLLQTYQYHVTTTNQAITALAMLQENQDNFDLVIIDVNIPDMDAFKFLELVGLEMDLPVIMLSVCGDTNLLMKGISHGACDYLLKPVRLEELRNIWQHVVRRNRSGVVWSVELHRNFVAAINHLGIDKAVPKKVLDTMNVENITRENVASHLQKYRPYLKRISCVTNQQASMVPSIF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04310 205 SUPERFAMILY Homeodomain-like 131 189 IPR009057 -
Vivi3g04310 205 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 179 IPR045279 GO:0009736
Vivi3g04310 205 FunFam Two-component response regulator 128 191 - -
Vivi3g04310 205 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Vivi3g04310 205 PIRSF RR_ARR_type-B 132 204 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi3g04310 205 PIRSF RR_ARR_type-B 1 135 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi3g04310 205 SMART REC_2 12 124 IPR001789 GO:0000160
Vivi3g04310 205 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 184 IPR006447 GO:0003677
Vivi3g04310 205 CDD REC_typeB_ARR-like 14 128 - -
Vivi3g04310 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 188 IPR017930 -
Vivi3g04310 205 Gene3D - 133 191 - -
Vivi3g04310 205 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Vivi3g04310 205 SUPERFAMILY CheY-like 11 132 IPR011006 -
Vivi3g04310 205 Gene3D - 11 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04310 Vivi-Chr3 77198087 77199527 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04310 8 203 Response Regulator Gene Family AT2G25180 54.724 3.46e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g04310 Response_reg 1.7e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04310 - K14491 vvo:131656129 372.859