Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04308 ATGGATGTTTCTAGTGACATGTTTCCCATCGGAATGCGTATTCTTGCAGTAGAATATGATCCCACTTGCCTTCAAGTTTTAGAAACTCTTCTCCAAACATATCAATACCATGTAACCACGACTAATCAAGCAACAACGGCATTGGCTATGTTGCAAGAAAACCAAGACAACTTTGACCTGCTAATCATTGATGTGAACATACCAGACATGGATGCATTTAAGTTTCTAGAACTTGTAGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCATGCGGTGATACAAATCTGCTGATGAAGGGAATTTCCCACGGTGCATGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAGGAACATTTGGCAGCATGTAGTTAGGAGGAACAAGGCCGGAGTTGTTTGGTCTGTCGAGTTGCACCGCAAGTTTGTCGCTGCTGTTAATCACCTAGGCATTGACAAGGCTGTACCCAAAAAAGTTCTGGATACCATGAATGTCGAAAATATTACAAGGGAGAACGTGGCTAGCCATCTCCAGAAGTATAGACCTTATTTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTCAAGCTGGATTTGCAGAGTTAACTGAATGA 627 0.4195 MDVSSDMFPIGMRILAVEYDPTCLQVLETLLQTYQYHVTTTNQATTALAMLQENQDNFDLLIIDVNIPDMDAFKFLELVGLEMDLPVIMLSACGDTNLLMKGISHGACDYLLKPVRLEELRNIWQHVVRRNKAGVVWSVELHRKFVAAVNHLGIDKAVPKKVLDTMNVENITRENVASHLQKYRPYLKRISCVANQQASQAGFAELTE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04308 208 SUPERFAMILY CheY-like 11 131 IPR011006 -
Vivi3g04308 208 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 183 IPR045279 GO:0009736
Vivi3g04308 208 Gene3D - 133 191 - -
Vivi3g04308 208 FunFam Two-component response regulator 129 191 - -
Vivi3g04308 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 188 IPR017930 -
Vivi3g04308 208 Gene3D - 11 132 - -
Vivi3g04308 208 PIRSF RR_ARR_type-B 1 134 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi3g04308 208 PIRSF RR_ARR_type-B 130 207 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi3g04308 208 Pfam Myb-like DNA-binding domain 136 184 IPR001005 -
Vivi3g04308 208 SUPERFAMILY Homeodomain-like 131 189 IPR009057 -
Vivi3g04308 208 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Vivi3g04308 208 CDD REC_typeB_ARR-like 14 128 - -
Vivi3g04308 208 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Vivi3g04308 208 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Vivi3g04308 208 SMART REC_2 12 124 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04308 Vivi-Chr3 77188712 77190613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04308 6 198 Response Regulator Gene Family AT2G25180 55.777 1.22e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi3g04308 Response_reg 1.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04308 - K14491 vvo:131656129 416.772