Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04307 ATGGCATCACAGCGCCACCACCCGCCACCGCCAACCCAACTTTCCGACTCCGATTCCGACGAAGGATCCTCCACCTCCCAACTCCTCCGTCACTCAGACCTCTCCGAATCCATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAACCAATGCCACCTCTGCCGACCTATCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGCCTCATATGTCTCGAACGCATCAAACCTTCCGATCCCACCTGGTCATGCACCTCCCTCTGCTTCGCAGTCTTCCATCTCTTCTGCATCCAAAGCTGGTCCCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTCACTCGCCTCTCCATTTCGCAGGACCAAGCCTCCGAAACATCGCTCTGGCATTGTCCCAAATGTAGGGGGGAATATCCCAAAAGCCTCATCCCTAAAACCTATCTATGCTTCTGTGGCAAATTGGAGAATCCTCCCAGTGATGATCCTTGGGTTTTACCACATTCATGTGGTGAAGTTTGTGGTAGATCTTTGAAGAATAATTGTGGACACCGTTGTTTGCTTCTCTGCCATCCCGGGCCATGTCCATCTTGTCCCCAGCTCGTTAAAGCTCGATGCTTTTGTGGGTCTCATCACGACACTAGAAGATGCGGTTTCAAGGAATTTTCTTGTGACGCTCCGTGTTCCAAGGTGTTGGATTGTGGTGTTCATAGGTGCAATGAGATTTGCCACCGTGGCGCTTGTCCACCGTGCAGGACTCGTGGTATTTATACGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAGTGTTGTGATCGTGTTTTTCGATGTGATGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTCAGAAAGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCTTTACAAGGGAAGAGAACATGTCCTTGTGGTAAAAGGGTCTATGAAGGAATGCCTTGTGATGCTCCTATGCAGGTTTGTGGGGCTACATGCGATAAAATGTTACCGTGTGGGTATCATAGGTGCCATGAACGATGCCACCGTGGACAGTGTATTGAGACTTGTAGGATTGTTGTTAGGAAGTGTTGTCGCTGTGGTAGCCTCAAGAAAGATGTACCTTGCTATCAAGATTTGGCATGTGAGAGGAAGTGCCTGACGATGCGTGACTGTGGCCGGCATCCATGTAAACGCCGTTGCTGTGACGGAGATTGTCCTCCATGTTCAGAGATATGTGGCAGGAAGCTTCGCTGTAGAAACCATAAATGCCAATCTCCATGCCATAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATATCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCCAGATGTCGTAAAAAATGTCCTATTAAGCCTTTATGTCGGCATGCCTTAATCAGCAAGCCACACAAATGCCATTACGGAGCATGCCCGCCCTGTCGCCTACCTTGTGGAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGTTGTCATGGTGCAAGGCCTCCTCCTAAGCCCGAATTTACTCTCAAACCAAAGAAAAAGAAGAATATACAACAGATTGGAAGTATTTCCGGAACTCCATGCCCTCCTTGCCCAGAACTAGAATGGAGACCATGTGTAGGGCAGCACATTGGAGCTGAGCAGATGATGGTCTGCTCTAATAAATCACAGTTCTCTTGTGAAAATCTATGTGGCAATCCTCTACCATGTGGCAATCATTATTGTACTAAAACTTGTCATCCCTTGGAGAACCGGTCTTCCACGAACCAGTTACTGAGAAGTGAGGCTTGTGAAAATTGTTCGCTTTCTTGCCAAAAGGAAAGAAAGCCTACATGTCAACATCACTGTCCTCGGCGATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGTTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAATGCATTTATTACAACGGCTTGTCTGCAAAGGATCAAGAGATTGCCCGGTCATGTGGTGGACCTTGTCATAGAAAGATGCCAAATTGTACACATCTATGCCCAGAGATATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTATAAAAAGGTCACTGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCCGGTCGCGACCCAAGCGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGACTGTGAGAGAAAAGTGCAGGTTGTTGAGTCAGAATTGCAATTGCGTAAATCTAGAGTTACAGAGGTAAAGGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGTAAAAGGCGAGACCGAGTAGTAGAGTCCAATGAACCAACAACATTACAGAAAGTGATTTCGAGAACAAAGCAGTTTTTTCTGTTTGTGTTTTTCTTGATCATACTTGTTGCTGCTACTCATTATGGGTACAAAGGACTACTATGGCTCAACGATTGGATGAATAAAGTCGATGAACAAAGACATAGATCTTCACGAATCAGATGA 2619 0.4696 MASQRHHPPPPTQLSDSDSDEGSSTSQLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSISQDQASETSLWHCPKCRGEYPKSLIPKTYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNNCGHRCLLLCHPGPCPSCPQLVKARCFCGSHHDTRRCGFKEFSCDAPCSKVLDCGVHRCNEICHRGACPPCRTRGIYTCQCGKVKEERECCDRVFRCDDPCEKKLSCGKHVCQKGCHSGECGECPLQGKRTCPCGKRVYEGMPCDAPMQVCGATCDKMLPCGYHRCHERCHRGQCIETCRIVVRKCCRCGSLKKDVPCYQDLACERKCLTMRDCGRHPCKRRCCDGDCPPCSEICGRKLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPRCRKKCPIKPLCRHALISKPHKCHYGACPPCRLPCGEEYQCGHACKLSCHGARPPPKPEFTLKPKKKKNIQQIGSISGTPCPPCPELEWRPCVGQHIGAEQMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHPLENRSSTNQLLRSEACENCSLSCQKERKPTCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNGLSAKDQEIARSCGGPCHRKMPNCTHLCPEICHPGQCPNPEKCYKKVTVRCKCQTLKKEWLCQDVQAAHNRAGRDPSDIPKNQFGVGLIPCNSDCERKVQVVESELQLRKSRVTEVKEPDNEKSVPKRRKRRDRVVESNEPTTLQKVISRTKQFFLFVFFLIILVAATHYGYKGLLWLNDWMNKVDEQRHRSSRIR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04307 872 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g04307 872 SMART znfxneu3 595 627 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 484 505 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 700 721 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 214 236 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 637 655 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 513 558 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 MobiDBLite consensus disorder prediction 788 812 - -
Vivi3g04307 872 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 31 506 IPR034078 GO:0003700
Vivi3g04307 872 CDD NF-X1-zinc-finger 390 438 - -
Vivi3g04307 872 CDD NF-X1-zinc-finger 283 330 - -
Vivi3g04307 872 CDD NF-X1-zinc-finger 176 224 - -
Vivi3g04307 872 CDD RING-CH-C4HC3_NFXL1 73 142 - -
Vivi3g04307 872 Pfam NF-X1 type zinc finger 595 606 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 293 311 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 638 654 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 Pfam NF-X1 type zinc finger 347 365 IPR000967 GO:0005634|GO:0008270
Vivi3g04307 872 CDD NF-X1-zinc-finger 337 386 - -
Vivi3g04307 872 CDD NF-X1-zinc-finger 230 278 - -
Vivi3g04307 872 CDD NF-X1-zinc-finger 417 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04307 Vivi-Chr3 77179837 77185898 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vivi3g04307 zf-NF-X1 0.00029 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04307 K15683 - gmx:100788262 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04307 3 77179837 77185898 Vivi3g04307 3 77179837 77185898 ECH