Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04300 ATGGCAAATTACTATGATATTGATGATATTTTGGTGGAGGAAGAGATTGTGTCGGTTAAATTTCTGAAGGAAGCATCTGGAGTGGGAATAGATCCCAGTTCTGAGGCAGACTTTATTGAAGTGGATTCAAAAGTTGAACTGCCTTTTTGGCTGGCTCATGAGTTGCAGTTGAGACAAGCAGTATCAGTCTATGTTCCTCTTTGTTTCAATCAAAAAACAAGACTAGAGATCCAAGCTGATTGTGCAAGTGTGGATCTGAGGTCCAGATGTCCATACTTCTATGAATTTGGTTGCAAGATAGCACCCATAGTTGGCGATAGAACCATTGGAGTTCTGTTGTTGTCTGCATTTAGGAATAGGTACAAGGAGATCCTCACAAAGGCACACACTGCAGCAATTGCTGCTGGTTCTAAATTTTGGACTATTCTAACAAATGAGGAGATCAATTTGTATGAGACAGCTCAATCTGCAATGGCATCCTTCAAGAAGTGGCGAATGGGGGGCCCCAGATTTCAGATAGCTTCTATTCTTGGAAGAAAGAGAAAACCAGCTGAATAG 558 0.414 MANYYDIDDILVEEEIVSVKFLKEASGVGIDPSSEADFIEVDSKVELPFWLAHELQLRQAVSVYVPLCFNQKTRLEIQADCASVDLRSRCPYFYEFGCKIAPIVGDRTIGVLLLSAFRNRYKEILTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGRKRKPAE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04300 185 PANTHER UNCHARACTERIZED 1 183 IPR010492 -
Vivi3g04300 185 Pfam GINS complex protein 45 147 IPR021151 -
Vivi3g04300 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Vivi3g04300 185 Gene3D - 1 167 IPR038437 -
Vivi3g04300 185 CDD GINS_B_Psf3 4 66 - -
Vivi3g04300 185 SUPERFAMILY PriA/YqbF domain 1 66 - -
Vivi3g04300 185 CDD GINS_A_psf3 61 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04300 Vivi-Chr3 77127945 77134180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04300 1 182 Core DNA Replication Machinery Family AT3G55490 68.681 4.48e-92 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04300 K10734 - gmx:100799874 304.679