Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04289 ATGAATATGGAAAATCACAATGATTCTTCTGAGTTACATAATTGGTTTCAATACAGTGATCCTTCACACTTTCCTCCTCAAATTCTACCTCAAAATATCTCTGATTCTTCTTCTGCTTCTTTTCAATATAGTGAGTTTCAGCCATGGAGTAATTTACCTGTTGAAGGAAGTTTAGAAGATAGAGCAGCAAGTGCTTCTAAAAGTCATAGTCAGGCAGAGAAAAGACGCAGAGATAGAATCAATACTCAGCTTGCTAATCTCAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTAATAGATCATGTCAAAGACCTAAAGCGAAAAGCAATGGATGTTAGCAGAGTGATCACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTACAACCATGTAATTGAAGACGAAACCAGCACTAACAAAGTGGACAAATTAAAGAACAATATCATCATCAAAGCTTCTGTTTGCTGCGACGATCGACCCGAACTGTTCTCCGAACTAATTCAAGTCCTCAAAGGGTTAAGACTTACAACAGTTAAAGCAGACATAGCAAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGACAGTGAAGAGAATGTTTGCATCAACACTCTCAAACAGTCCCTCAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTTTTGCCTTCACATTTCGTATAG 765 0.3765 MNMENHNDSSELHNWFQYSDPSHFPPQILPQNISDSSSASFQYSEFQPWSNLPVEGSLEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVIEDETSTNKVDKLKNNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04289 254 CDD ACT_UUR-ACR-like 162 197 - -
Vivi3g04289 254 SMART finulus 70 119 IPR011598 GO:0046983
Vivi3g04289 254 Pfam Helix-loop-helix DNA-binding domain 67 113 IPR011598 GO:0046983
Vivi3g04289 254 CDD bHLH_AtAIG1_like 59 136 - -
Vivi3g04289 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 117 IPR036638 GO:0046983
Vivi3g04289 254 PANTHER TRANSCRIPTION FACTOR BHLH30 37 250 IPR045847 GO:0003700|GO:0006355
Vivi3g04289 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Vivi3g04289 254 MobiDBLite consensus disorder prediction 58 79 - -
Vivi3g04289 254 Gene3D - 59 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04289 Vivi-Chr3 76803017 76806178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04289 3 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.697 6.54e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g04289 HLH 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04289 - - gmx:100799687 353.214