Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04282 ATGGATGAGAGCATCATGTCAGGCTTTTGTATTAGAAGTGGAAGCTGTGTTCGTAGTGGCAGTACTACTACTACTGGCACAAAATGTGGGCGTTGGAATCCAACTAACGAACAAGTTAAGATTCTGACTGAACTTTTCAGTTCAGGACTTCGTACTCCAAGCACTGATCAGATTCAGAAAATCTCTACTCAGCTTAGTTTTTATGGCAAGATTGAGAGCAAAAATGTTTTCTATTGGTTTCAAAATCATAAGGCTAGGGAAAGACAGAAGCGCCGTCGGAAGGTTTCGTCCTCGGATGATGATGATCGTCGAGAAAATACTACGTCTAGAAATTCTTCTTCACAAAATTTTGCTCAGCTATATCAGGTTTCCGAGCCTAAGAGGGTGATTGAGACACTTGAGCTTTTTCCATTGAACTCATTTGGTGAATCAGGATCAAAGAATTTGAGGAACTATACAAATGAATGCAGGGATAATAATCATAATAATAATATGTGTTCATACACAATGAGGGAACAAATGGATCATCCACCATTAGATCTTTGTTTAAGTTTTATGTAA 561 0.3815 MDESIMSGFCIRSGSCVRSGSTTTTGTKCGRWNPTNEQVKILTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRRKVSSSDDDDRRENTTSRNSSSQNFAQLYQVSEPKRVIETLELFPLNSFGESGSKNLRNYTNECRDNNHNNNMCSYTMREQMDHPPLDLCLSFM 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04282 186 MobiDBLite consensus disorder prediction 88 117 - -
Vivi3g04282 186 FunFam WUSCHEL-related homeobox 11 28 96 - -
Vivi3g04282 186 CDD homeodomain 31 91 IPR001356 GO:0003677
Vivi3g04282 186 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 114 IPR044555 GO:0003700|GO:0099402
Vivi3g04282 186 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Vivi3g04282 186 SMART HOX_1 27 94 IPR001356 GO:0003677
Vivi3g04282 186 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Vivi3g04282 186 MobiDBLite consensus disorder prediction 92 108 - -
Vivi3g04282 186 Gene3D - 28 95 - -
Vivi3g04282 186 SUPERFAMILY Homeodomain-like 22 92 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04282 Vivi-Chr3 76531058 76531899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04282 14 186 Wox Gene Family AT3G11260 52.151 1.05e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi3g04282 Homeodomain 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04282 - - gmx:100791433 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04282 3 76531058 76531899 Vivi7g02075 7 82730802 82731685 ECH
Vivi3g04282 3 76531058 76531899 Vivi3g04282 3 76531058 76531899 ECH
Vivi3g04282 3 76531058 76531899 Vivi7g02075 7 82730802 82731685 PCT