Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04278 ATGGGAAAGAAACGGAGCTCTTCTCAAATCGAGAAGCTTCCCACCACCGCCCCTAAAGACGACCAGCCACCCACCCTGGCACCCACCCTGGCCCTGACCCTGTCCCTGAAAGACGAAAAACCGTTGTCTCAACATCCTGAAGAAGACAAGGATGAAGAAGATTCAGCTTCTTCATCTGAAGCAGAAGAGGAAGCAGAAGAGGAAGCAGAAGAGGAGGCAGAAGAGGAGGAGGATGACGAAGAAGATGATTCACCTTCCAAAATCACTACTCCATCTGCCAATCCCAAAACCGAAGACGATTCTGACTCCGGAGATGAAGAAACTGATTCAGACTCTGAAGAAGATCCAGCGCCCAAACTGAAATCCCTCAACTCCTCAAAGCCTCTCCTTCCGATCAAATCGAAGGTCGAAGCAAAACCCTCTTCAGCACCGACCAGATCTGGAACCAAACGTCCCGTCGACAACGATCCCAAACAACCAAAGAAGAGGAAAATTACCGTTCTTGCTGCTGCTGCTGAGAAAGCCCCTGAAGAGGATAACAAAAAGTCAAAGTCCGGCGATGATTCTAAAAAGCTGTTTCAGAGAGTCTTCACCGAGGATGATGAAATAGCTATTATGAAAGGTCTGTATGATTACATTACAACAACAAGGAACGATCCTTTCAAGTGGGTCTCGGCTTTTTACGAGTTTGTGAAAAAGTCGATTCACTTTAAAGTTACACTGGAGCAGCTCAAAGACAAGATGCGGAGGTTAAAGCTGAAATACGAGACTAAAGTCAAGAGTGGAAAGACATCTAATTTCCCTAAAGAGAGCGACCGGGTAATATTTGAATTCGGCCAAAAGATTTGGGGTGGTAAACTCAATTTGAATGAAGCTGAAGAAAAGGGAAAACCTAATGGGAAACTTTCCAAGAAAGAGCCTGCTGCTAAGAAACCAAGAACAACTACTAAGAAATTGGTTTTGGAACCTGATTCCCCGCTGGTTGTGAAGGAAACCAGGATGGTGGAAAGAACTGATAGGGAGAATCCCGGTCCGAGTTTGGCTTTGAATGAACTGTTTCGTTTTGACGAGAGCATAAGTGCCTCGAGGAACCCCGTGGCTGCGATGGAGAGAGGAATGGAGTTCGCGGAGGAATCAGAGAAGGAAGAGTTAAAGAGAAGGTGGGACAAGGTGCAAATTGCTGAACTGGAGGTGTTTAAGATGAAAGCTGATTTGGCTGTGGATCAGGCTATATCGATACTGGAAGCATTGAAGTCGTCTTCAAGTGATTAG 1272 0.4591 MGKKRSSSQIEKLPTTAPKDDQPPTLAPTLALTLSLKDEKPLSQHPEEDKDEEDSASSSEAEEEAEEEAEEEAEEEEDDEEDDSPSKITTPSANPKTEDDSDSGDEETDSDSEEDPAPKLKSLNSSKPLLPIKSKVEAKPSSAPTRSGTKRPVDNDPKQPKKRKITVLAAAAEKAPEEDNKKSKSGDDSKKLFQRVFTEDDEIAIMKGLYDYITTTRNDPFKWVSAFYEFVKKSIHFKVTLEQLKDKMRRLKLKYETKVKSGKTSNFPKESDRVIFEFGQKIWGGKLNLNEAEEKGKPNGKLSKKEPAAKKPRTTTKKLVLEPDSPLVVKETRMVERTDRENPGPSLALNELFRFDESISASRNPVAAMERGMEFAEESEKEELKRRWDKVQIAELEVFKMKADLAVDQAISILEALKSSSSD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04278 423 MobiDBLite consensus disorder prediction 53 84 - -
Vivi3g04278 423 MobiDBLite consensus disorder prediction 174 190 - -
Vivi3g04278 423 MobiDBLite consensus disorder prediction 289 316 - -
Vivi3g04278 423 PANTHER BNAANNG10740D PROTEIN-RELATED 55 409 IPR007592 GO:0006355
Vivi3g04278 423 Pfam Protein of unknown function, DUF573 193 284 IPR007592 GO:0006355
Vivi3g04278 423 MobiDBLite consensus disorder prediction 1 190 - -
Vivi3g04278 423 Coils Coil 55 83 - -
Vivi3g04278 423 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04278 Vivi-Chr3 76482686 76484373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04278 141 419 GeBP Transcription Factor Family AT4G25210 30.000 1.07e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vivi3g04278 DUF573 8.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04278 - - tpra:123884521 268.47