Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04261 ACCACCATATCTGTCTCCCGAACCCATGACATGAACATTCTCAACAAACACACCATCGCAAATGATGTCGGAAAGTCTCACGTTGTTATCATCAACAACATTCAAAATGTTTCTCCCCGGAATTCCACCGCCGAGAAAGGAAGAGTCTCCTCTGTATCCGTGTCTGAGTGTCGTGTAGATTTGGATCTGAAGAGCGATGATGTCAATGTCAAGGCACATTTGGTTAACGTTAAGAGGGATTGTAGAATTTGCCACCTCAGCATGGATATGAACAACCACGATAAACATGAATCTGAGAGTCCCATTGAACTAGGATGTTCCTGTAAAGATGATTTGGCTGCTGCCCATAAACAATGTGCTGAAACATGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGCAATGTAGCTGGTCATCATGTAGTTGGAGTTGAAATGACAGAACAATGGAATGAAGTTAATGATGCGTCCATGCTACCACCAACTGAACCTACCGCGACTTCAGAAACTCGAAGTTTCTCGCGTGGGCAATGGTTCATGAATTTCATCCTTGTCTGTATGGTCTTTGCCTTTATCTTTTGCTGGCTTTTTCACTTCAATATGCCTTCTTGA 630 0.427 TTISVSRTHDMNILNKHTIANDVGKSHVVIINNIQNVSPRNSTAEKGRVSSVSVSECRVDLDLKSDDVNVKAHLVNVKRDCRICHLSMDMNNHDKHESESPIELGCSCKDDLAAAHKQCAETWFKIKGNKTCEICGSIASNVAGHHVVGVEMTEQWNEVNDASMLPPTEPTATSETRSFSRGQWFMNFILVCMVFAFIFCWLFHFNMPS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04261 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 144 IPR013083 -
Vivi3g04261 209 PANTHER ZINC FINGER, RING-CH-TYPE 44 208 - -
Vivi3g04261 209 Pfam RING-variant domain 81 135 IPR011016 GO:0008270
Vivi3g04261 209 SMART ringv_2 80 136 IPR011016 GO:0008270
Vivi3g04261 209 SUPERFAMILY RING/U-box 79 137 - -
Vivi3g04261 209 ProSiteProfiles Zinc finger RING-CH-type profile. 73 142 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04261 Vivi-Chr3 76008553 76009894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04261 48 209 C3H Transcription Factor Family AT5G05830 56.442 5.00e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04261 - - gmx:100818979 221.861