Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04242 ATGACTCCATCTTCAGATATCAACCATCTTTCTAACCCTTGCATATATGGGGATTTTTCTTCTTCATACTCAGAAAGAAAATCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGGTCCAATAGAGGAAGAGTTGGTGGTCATCATCTTCGGCCGCCTATAGAAGAAAACATGGCGTGGCGAGCTCCACCTAGATCATTGGATAACCGTGCTAGAACGAAAAAGGAGGATGAGGATTTGAGCAATGCGATTGCACTTTCTTTGAATGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCAGTCGTCTCTACACCCTCCATATGCCCCTTTACCTTATTATCCCCGGGGATACAGCATGCCATCGCATACCAGATTATGTGGAGGGTGCAACAAGGAGATACTCTACGGAAATTGTTTGGGAGTCGAACAAAGTTATTATCATCCAGACTGCTTTCGATGTCACTCTTGTCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTCAAAGAATTGAGCCATCCTAAATGTGAAGTTTGCCGTCATTATATACCTATAAATGGATCTGGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACGGCTCGATGTTGTAGCTGCGAAAGATTAGAGTCTCGGGGAGAAAGATACTTTAGATTGGATGATGGACGGATTTTGTGCTTTGAGTGTATGGAATCGGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTACTACGAAGGAATGAATATGAGAATCGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAACGAAGCCATTGTCGGAGAGAAGAATGGTTACCATCACGTTCCGGAAACAAGAGGCTTATGTCTTTCAGAAGAACAAACTGTCACCAGTGTACATAGATGGTCAAAAATAGGTGGCCATCGGTTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCACGGTTGGTTACGCCTTAAAGGTTACCGCAATCTTGACCCTGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCGGAAGTCATGTCAGGCTCTAGAACCATGCCATCAATATCCGCGGCTTCATCCTCCTCCTCCTCTTCCTCATCCTCCTACTCATCAAAGAAAGGCGTGAAGTCCAAAGTTGAAAATAAATTGGGCGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCTCCGGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCGGTTAATAAATATGGTTTACGTTGTACTCTCGACCATATTCGTTTGACCGGTCAATTCCCTATGTAA 1539 0.425 MTPSSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGRVGGHHLRPPIEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMQSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYYHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCRHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSVHRWSKIGGHRLIGMRGQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSISAASSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04242 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Vivi3g04242 512 Pfam LIM domain 145 198 IPR001781 -
Vivi3g04242 512 Gene3D Cysteine Rich Protein 139 202 - -
Vivi3g04242 512 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Vivi3g04242 512 Pfam Protein DA1 294 507 IPR022087 -
Vivi3g04242 512 CDD LIM_DA1 145 197 - -
Vivi3g04242 512 CDD LIM 172 227 - -
Vivi3g04242 512 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Vivi3g04242 512 SMART lim_4 144 196 IPR001781 -
Vivi3g04242 512 PANTHER PROTEIN DA1-RELATED 2 33 511 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04242 Vivi-Chr3 75459326 75462948 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g04242 DA1-like 6.3e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04242 - - gmx:100793901 885.174