Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04241 ATGACTCCATCTTCAGATATCAACCATCTTTCTAACCCTTGCATATATGCAGGGGATTTTTCTTCTTCATACTCAGAAAGAAAATCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGGTCCAATAGAGGAAGAGTTGGTGGTCATCATCTTCGGCCGCCTATAGAAGAAAACATGGCGTGGCGAGCTCCACCTAGATCATTGGATAACCGTGCTAGAACGAAAAAGGAGGATGAGGATTTGAGCAATGCGATTGCACTTTCTTTGAATGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTAATGATGATTATGCAAAGGGACTTCAGGATCGTATGCAGTCGTCTCTACACCCTCCATATGCCCCTTTACCTTATTATCCCCGGGGATACAGCATGCCATCGCATACCAGATTATGTGGAGGGTGCAACAAGGAGATACTCTACGGAAATTGTTTGGGAGTCGAACAAAGTTATTATCATCCAGACTGCTTTCGATGTCACTCTTGTCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATATTGTTTCAAAGAATTGAGCCATCCTAAATGTGAAGTTTGCCGTCATTATATACCTATAAATGGATCTGGTTTGATTGAGTATAGGTGTCACCCTTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACGGCTCGATGTTGTAGCTGCGAAAGATTAGAGTCTCGGGGAGAAAGATACTTTAGATTGGATGATGGACGGATTTTGTGCTTTGAGTGTATGGAATCGGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTACTACGAAGGAATGAATATGAGAATCGATCAACAAATCCCGATGCTTCTAGTTGGGAGAGAAGCACTTAACGAAGCCATTGTCGGAGAGAAGAATGGTTACCATCACGTTCCGGAAACAAGAGGCTTATGTCTTTCAGAAGAACAAACTGTCACCAGTGTACATAGATGGTCAAAAATAGGTGGCCATCGGTTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCACGGTTGGTTACGCCTTAAAGGTTACCGCAATCTTGACCCTGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCGGAAGTCATGTCAGGCTCTAGAACCATGCCATCAATATCCGCGGCTTCATCCTCCTCCTCCTCTTCCTCATCCTCCTACTCATCAAAGAAAGGCGTGAAGTCCAAAGTTGAAAATAAATTGGGCGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCTCCGGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCGGTTAATAAATATGGTTTACGTTGTACTCTCGACCATATTCGTTTGACCGGTCAATTCCCTATGTAA 1542 0.4254 MTPSSDINHLSNPCIYAGDFSSSYSERKSGFMKWFGKIFKIGSNRGRVGGHHLRPPIEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGANDDYAKGLQDRMQSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYYHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCRHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSVHRWSKIGGHRLIGMRGQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSISAASSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04241 513 PANTHER PROTEIN DA1-RELATED 2 34 512 IPR045218 -
Vivi3g04241 513 CDD LIM_DA1 146 198 - -
Vivi3g04241 513 CDD LIM 173 228 - -
Vivi3g04241 513 Gene3D Cysteine Rich Protein 140 203 - -
Vivi3g04241 513 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Vivi3g04241 513 SMART lim_4 145 197 IPR001781 -
Vivi3g04241 513 Pfam LIM domain 146 199 IPR001781 -
Vivi3g04241 513 Pfam Protein DA1 295 508 IPR022087 -
Vivi3g04241 513 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Vivi3g04241 513 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04241 Vivi-Chr3 75459324 75462948 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g04241 DA1-like 6.3e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04241 - - gmx:100798829 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04241 3 75459324 75462948 Vivi3g04241 3 75459324 75462948 ECH