Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04235 ATGAGAAGTTTCAATAAGAACAAGGGACTCGCCAAAAACAGCAACACCAGCCCTAGGTCAACAATCCTCAAATCTGCAGGAGGTGGAAAGACAGCTTCATTAGGGAATCCTTTCACAAAAGTTCAATTGAGAGAGCTTGAAAGACAGATTACCATTTACAAGTATTTTACAGCTTGTGTTTCGGTTCCTTCTTATCTTCTCTCATCCACCCCTACCTCATCATGTAGTACCTCATCAAGTTATAATATTAATGATCCCGTGGAAGGAAGATGTCGAAGAACGGATGGAAAACAATGGAGATGTTCAAGAGGTGTTGGTCCTAATAATCAGTATTGTGATCGACACATGCATAGAGGTACTCGCCGTTCAAAAAAATCTGCGGAACTTCGCAACAATCATACAAGAAATTATTCCTCACATTTTGCTGCATCCACATCTTCTCCTCCTTATCTCCAACCTTCCGTTTCCTCTGATAATCGAAACTCTGGTGTCCAATTAGCTTCAAGTTTTGAGCCTTCAAATAAGCAACCAAGGATGCTGAATGGAGATCCAATGTCTCTTGGTGCTTCTAACTCAGGTTGGCACTACAGCATACCTGTGAATCATCAGTGTATGAAGTCACTTCCACAGTATAATACTCTCTTATACAATCCCACTCTTGTTCCAATTCAACCAAGAGGGATTAGTTCTGCAGACACTGTAGACAAAAATGCTTCTGCAACAGGTGAATCATCCGTTTTATCTATTGATTATTCAAACATGGGTCCATTAGGTGAAATTTTTAAGCCTTACTCATCTGTAAAAAGTCTCATGTAA 816 0.3995 MRSFNKNKGLAKNSNTSPRSTILKSAGGGKTASLGNPFTKVQLRELERQITIYKYFTACVSVPSYLLSSTPTSSCSTSSSYNINDPVEGRCRRTDGKQWRCSRGVGPNNQYCDRHMHRGTRRSKKSAELRNNHTRNYSSHFAASTSSPPYLQPSVSSDNRNSGVQLASSFEPSNKQPRMLNGDPMSLGASNSGWHYSIPVNHQCMKSLPQYNTLLYNPTLVPIQPRGISSADTVDKNASATGESSVLSIDYSNMGPLGEIFKPYSSVKSLM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04235 271 PANTHER GROWTH-REGULATING FACTOR 5 14 196 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi3g04235 271 ProSiteProfiles WRC domain profile. 85 129 IPR014977 -
Vivi3g04235 271 MobiDBLite consensus disorder prediction 137 186 - -
Vivi3g04235 271 MobiDBLite consensus disorder prediction 1 36 - -
Vivi3g04235 271 MobiDBLite consensus disorder prediction 68 85 - -
Vivi3g04235 271 SMART QLQ_2 36 72 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi3g04235 271 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g04235 271 Pfam QLQ 37 67 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi3g04235 271 ProSiteProfiles QLQ domain profile. 37 72 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi3g04235 271 MobiDBLite consensus disorder prediction 68 88 - -
Vivi3g04235 271 MobiDBLite consensus disorder prediction 110 129 - -
Vivi3g04235 271 Pfam WRC 88 127 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04235 Vivi-Chr3 74876082 74877102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04235 37 128 GRF Transcription Factor Family AT5G53660 54.839 1.05e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi3g04235 WRC 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04235 - - psat:127088149 257.684