Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04216 ATGAAGACGCACTGCTCTCTTCTCCGACCAATGAGAGCAAGCCTCCTCCTTCTAACAGCGTCACTCCTCCTGCTAACTTGCGCCACGCACGTCCTCTCCGCCACCTCATGTCCACCCTGCGGCAACACCACCGTACCCTTCCCACTCAGCACCACCACCTCATGCGGTGACCCGTTATACAAAATCCGCTGCACCTCCTCCGGTTCACTAGTCTTCGACACACTCAACAACACCTACCCTATCGAATCCATCAACCCAAAAACCCAACGCTTCGTAATCCAACCCGCTCCACTCATCCCCAACACATGCACTTCCACCGATAAAATCCACCAAGGAATCCAACTCAACAGCACTCTTCCCTTCAACATCACGAGCTCCAACACCATCGTTTACCTCAACTGCACACGCACGCTTCTCCAGTCCCCTCTCAACTGCTCCGCCGCGAGCGCTTGTCATGCTTACATCAACGCCACCGCTTCTGTTTCAGCCTGCCAGACCGGTCCGCTTTGCTGCACTTACCGAACCGGTGGTTCCAGTAACTCTTACATGATCCGTGTTAGAGACTCGGGGTGTAGCGCTTACTCTAGTTTTGTTAACCTGGATACGAGTCTTTCGGTGAACCGGTGGTCTAAACCCGGTTTAGAGATTCAGTGGATGTCGCCAAGAGAAACCGTTTGTGGGTCCCAGAAAGATTGTGATGCTGCCACGTCGACTTGTGGGGTTGATGCTTCATCGGCTAATGGGATCAAGAGGTGTTTCTGTAATGGAGAGCTTGTGTGGGACCCTATTCAAGGGGTGTGTAGTAAAAAAATTACTTGCTTCAACCCTGATGGCTGTGACGATTCGAATAATAAGACAGCTATAATAGCAGGTACAACATGTGGAGTTGGAGCTGCACTCATCCTAGCAACAATTGCCATTCTTCTCTACAAACGCCACAAACGCATATTAGAAGCACAACTACGCCTGGCCAAAGAGCGTGAAGGAATTCTAAACGCAAGTGGTGGAGGAAAAGCAGCCAAACTCTTCACCGGCAAAGAGATTAAAAAGGCCACAAACGACTTCTCCGCCGACCGACTCCTCGGTGTTGGCGGCTACGGTGAAGTCTACAAAGGCATTCTTCAAGACGGTACAACCGTAGCTGTTAAATGTGCTAAGCTTGGAAACCCAAAAGGCACTGACCAAGTCCTCAACGAAGTTCGCATATTATGCCAAGTTAACCACAGAAACCTCGTTGGATTACTAGGTTGCTGCGTTGAATTGGAACAACCGATATTGGTTTACGAGTTCATAGAAAATGGAACACTTCTTGATCATTTAACAGGTCAAATGCCAAAGGGACGTGCATCACTTAATTGGAGCCATCGTCTTCGCGTTGCTCGCGACACTTCTGAAGGTCTTGCTTACCTTCACTTCATGGCAGTGCCACCTATCTACCATAGAGATGTTAAGTCAAGTAACATTCTTCTAGACTTCAAGATGAATGCTAAGGTTTCGGATTTCGGGTTATCACGTTTGGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAAGGAACACTCGGGTATCTCGACCCTGAGTATTACAGAAACTATCAGTTAACTGATAAGAGTGATGTTTATAGTTTCGGAGTTGTGTTGCTTGAGCTTCTGACGTCTCAGAAGGCGATAGATTTTAATCGGGCTTCTGATGATGTGAATTTAGCGGTTTATGTGCAAAGGATGATGGATGAAGAGAAAGTTTTTGATGTTATTGATCCTGTTTTGAAGAATGGTGCTAGTAATATAGAGCTTGATACGATGAAGGCATTGGCATTTTTGGCTTTGGGTTGTTTGGAGGAGAAGCGACAGAATCGACCTTCGATGAAAGAGGTTTCAGAGGAGATTGAGTATATCATTAGTATTGCCAATGCAAAAGTAGTGGAAAAGTAG 1935 0.4708 MKTHCSLLRPMRASLLLLTASLLLLTCATHVLSATSCPPCGNTTVPFPLSTTTSCGDPLYKIRCTSSGSLVFDTLNNTYPIESINPKTQRFVIQPAPLIPNTCTSTDKIHQGIQLNSTLPFNITSSNTIVYLNCTRTLLQSPLNCSAASACHAYINATASVSACQTGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLDTSLSVNRWSKPGLEIQWMSPRETVCGSQKDCDAATSTCGVDASSANGIKRCFCNGELVWDPIQGVCSKKITCFNPDGCDDSNNKTAIIAGTTCGVGAALILATIAILLYKRHKRILEAQLRLAKEREGILNASGGGKAAKLFTGKEIKKATNDFSADRLLGVGGYGEVYKGILQDGTTVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLTGQMPKGRASLNWSHRLRVARDTSEGLAYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAVYVQRMMDEEKVFDVIDPVLKNGASNIELDTMKALAFLALGCLEEKRQNRPSMKEVSEEIEYIISIANAKVVEK 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04216 644 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vivi3g04216 644 Gene3D Phosphorylase Kinase; domain 1 318 430 - -
Vivi3g04216 644 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04216 644 FunFam Wall-associated receptor kinase-like 20 317 430 - -
Vivi3g04216 644 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 633 IPR044652 GO:0004672
Vivi3g04216 644 SMART serkin_6 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04216 644 CDD STKc_IRAK 361 631 - -
Vivi3g04216 644 Gene3D Transferase(Phosphotransferase) domain 1 431 643 - -
Vivi3g04216 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vivi3g04216 644 Pfam Wall-associated receptor kinase galacturonan-binding 37 93 IPR025287 GO:0030247
Vivi3g04216 644 FunFam Wall-associated receptor kinase-like 20 431 643 - -
Vivi3g04216 644 Pfam Protein tyrosine and serine/threonine kinase 358 629 IPR001245 GO:0004672|GO:0006468
Vivi3g04216 644 SUPERFAMILY Protein kinase-like (PK-like) 340 629 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04216 Vivi-Chr3 74148152 74152513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04216 14 643 Receptor kinase-like Gene Family AT5G02070 50.840 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g04216 PK_Tyr_Ser-Thr 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04216 - - gmx:100305415 1082.78