Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04174 ATGGAGGAATCTCAAAATTTGATATGGATGAAAAGGAAACAAGTCTTGAACAACAACAGCTCTTGGGAGGAAAAAGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCACCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGACAGAGCTAGGCTCAAACAATCTCTTACCAACCCTAATGATTTCACAACAAGTAGAGTTTCAACTACATCTACACAAGAAAATTGTTTTCAGATTCAGCCCAACGTGACGTCGATTAGATGGGGGAATTCGAATAGCCACATGGAGTTTCATGATTCTGAGTCAAAAGGGCTACTAGTTCATGCAAGGGAACAAATTTTCAAAGGCTATGGTTATAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAATTTGCAAACTGATGATTTATGTGGGGACAAAGGCATAAGTTATAAAAAACCAAAGACAGTAGCTTCTGTTTCTTCTTCACTTCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCAGCAGTTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAATTAACACAGAAAGTTTAG 690 0.3812 MEESQNLIWMKRKQVLNNNSSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQSLTNPNDFTTSRVSTTSTQENCFQIQPNVTSIRWGNSNSHMEFHDSESKGLLVHAREQIFKGYGYNDYVETSLSMGQNNSMFGQNLQTDDLCGDKGISYKKPKTVASVSSSLPVLLKPCLNDRCLTFQSAVGIKPGMEDLDLELRLGKLTQKV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04174 229 Gene3D Classic Zinc Finger 42 100 - -
Vivi3g04174 229 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
Vivi3g04174 229 Pfam C2H2-type zinc finger 45 69 - -
Vivi3g04174 229 PANTHER OS07G0101800 PROTEIN 16 224 - -
Vivi3g04174 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vivi3g04174 229 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04174 Vivi-Chr3 73570866 73573132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04174 8 77 C2H2 Transcription Factor Family AT2G37740 68.571 6.96e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g04174 zf-C2H2_6 3.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04174 - - aprc:113851273 295.049