Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04164 ATGGCTAATCGATGGTGGACTGGGAATGTGGCAACGATGCCAACATCACCGACTTCACTTCAGCAGCTGAAAAGAGAAGAGTTGATGGAAAGCAACAACAACGCGAACTCGACTCCGACTAACAGCAGTAACAGCAACAATAATGAAGATGAAGATAACAACAACCCTGAAGATCAGAATCCTTCGGAGCCTGGTAGTAGTAGTGGCCGGAGGCCACGTGGTAGGCCGCCGGGGTCTAAGAACAAACCCAAACCGCCTATTGTTATAACGAAAGAATCTCCGAACGCGCTTCGGAGCCACGTGTTGGAAATAGGTAGCGGTAGTGATGTGGCGGAGAGTATAGCTGGTTTTGCGAACCGCCGTCATCGCGGTGTGTCGGTTTTGAGTGGGAGTGGCATTGTGACTAATGTGACGCTTAGGCAACCGGCTGCTCCTGGTGGTGTTATTACTCTTCATGGAAGGTTTGAGATTCTGTCGCTTTCGGGTGCTTTTCTGCCTTCGCCGTCTCCGCCTGGAGCGACCGGGCTGACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGCGCGGTGGCGGGCTCTTTGGTGGCTTCTGGACCGGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGCTGCCATTGGAAGATGAACAAGGTGGTGATCAAGAGGAAATGGAAATGCAAGTTGAACAACAATCTGGTGTGAATTCAGCTACTATTGCAGCAGGAGGAGTTGCTTCTTCTCAAGGTTTGGAATTCGTCGAACAACACCATCATCATCAACAACAACAACCGGTTTCAATGCCTATGTATAATTTGCCACCGAATCTTATACATAATGGTAATCAAATGCCTCATGATGTGTTTTGGGGAGCTCCACCTCCTCGTCCTCCTCCTCCTTTCTGA 921 0.494 MANRWWTGNVATMPTSPTSLQQLKREELMESNNNANSTPTNSSNSNNNEDEDNNNPEDQNPSEPGSSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIGSGSDVAESIAGFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGDQEEMEMQVEQQSGVNSATIAAGGVASSQGLEFVEQHHHHQQQQPVSMPMYNLPPNLIHNGNQMPHDVFWGAPPPRPPPPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04164 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 222 - -
Vivi3g04164 306 Gene3D - 97 229 - -
Vivi3g04164 306 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Vivi3g04164 306 CDD DUF296 98 180 IPR005175 -
Vivi3g04164 306 MobiDBLite consensus disorder prediction 1 50 - -
Vivi3g04164 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Vivi3g04164 306 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Vivi3g04164 306 MobiDBLite consensus disorder prediction 1 94 - -
Vivi3g04164 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 297 IPR014476 GO:0003680
Vivi3g04164 306 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04164 Vivi-Chr3 73118538 73120482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04164 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.374 6.89e-77 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04164 - - gmx:102667174 301.982