Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04162 ATGTCTACAGAAACGGTTTCTTATTGGTGTTACCGATGCAGTCGTTTTGTGAGATTAGGGAGACAAGAAACGGTGGTTTGCCCTGATTGTGACAGCGGGTTTCTCGAGGAAGTTGATCAACCGTCGCGCTCTCTCCATGTAGACTCCCGCCGCCGACGTTTTCCGGCCGCCGCCATGTACATGATCGGTCAACGTCCTGGTTCTGGTTCCGGTTCCGATCATTTTCATAGTTTCCGTCCATCTTCTCTACATAGAACTCGCCGCAACGGTGGCGAACGATCTCCTTTCAATCCGGTTATTGTCCTTCGCGGTGGTGGATCGATGGAGGTAACAGAAGGAGGTAACAATAACAATAACAACGGCGGTGTTGGTGGTGTTGGTGTTGGTGTTGGTATTGGAGGAGGTGGTGGAGGTGGAGAGAGCCGTGGTTTTGAGCTTTTCTATGATGACGGTGCTGGTTCGGGATTAAGGCCTTTGCCTCCGAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGCTGGAGCAGCTTTCTCAGATTGAAATCAATGGGATTTCGAGATATGAACATCCTCCGGCGACAAAATCGGCTATTGATTCTTTACCGACGATTGAAATTGATGATACTCATTTGGAAATGGAATCGCACTGTGCGGTTTGCAAAGAAGCTTTTGAGTTAACTAATGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGACTGTATTTTGCCTTGGCTTGCACTTCATAATTCTTGCCCGGTTTGTCGTCATGAGTTACCTTCGGATTCGGATGCTGGAACAAATGTAAATGTTCAACCACAATCACAATCGCAACCACTGCCACAAACACAATCACAAACACTAACACAGTCGCAATCACTTGGTTTGAATGAGGAAGAGAGTAATGTTGGGTTAACTATATGGAGATTACCGGGTGGTGGTTTTGCTGTGGGGAGATTTTCGGGTGGAAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTATACTGAAATGGATGGTGGGTTTAACAATGGTGGTGAACCTAGGAGGATTTCTTGGTCTTCTATTGGGAGTAGAGGGAGGGAGAGAGGTGGTGGTTTGAGAAGGTTTTTTGGGAGTTTCTTGGGTTGTTTTGGCGGCGGTGGAGTTGAGAATCGGCGCACTGTTTCGAGTCTTTCGAGTAGAGAGACGAGATCTTTGAGGACTAATTCATCTCATTCTTCGAGTATGGATCCGTCTCCACGGTCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTAG 1308 0.4648 MSTETVSYWCYRCSRFVRLGRQETVVCPDCDSGFLEEVDQPSRSLHVDSRRRRFPAAAMYMIGQRPGSGSGSDHFHSFRPSSLHRTRRNGGERSPFNPVIVLRGGGSMEVTEGGNNNNNNGGVGGVGVGVGIGGGGGGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRYEHPPATKSAIDSLPTIEIDDTHLEMESHCAVCKEAFELTNVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDSDAGTNVNVQPQSQSQPLPQTQSQTLTQSQSLGLNEEESNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSIGSRGRERGGGLRRFFGSFLGCFGGGGVENRRTVSSLSSRETRSLRTNSSHSSSMDPSPRSRRTWSMDVNSGMRSW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04162 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 264 - -
Vivi3g04162 435 MobiDBLite consensus disorder prediction 390 435 - -
Vivi3g04162 435 CDD RING-H2_RNF126-like 219 260 - -
Vivi3g04162 435 MobiDBLite consensus disorder prediction 269 300 - -
Vivi3g04162 435 SUPERFAMILY RING/U-box 199 266 - -
Vivi3g04162 435 MobiDBLite consensus disorder prediction 65 98 - -
Vivi3g04162 435 FunFam E3 ubiquitin-protein ligase RING1-like 181 266 - -
Vivi3g04162 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 266 IPR013083 -
Vivi3g04162 435 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Vivi3g04162 435 SMART ring_2 219 259 IPR001841 -
Vivi3g04162 435 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Vivi3g04162 435 Pfam Protein of unknown function (DUF1117) 307 413 IPR010543 -
Vivi3g04162 435 Pfam Ring finger domain 218 260 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04162 Vivi-Chr3 72988479 72990671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04162 158 266 C3H Transcription Factor Family AT5G01980 44.037 5.66e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04162 K11982 - gmx:100807324 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04162 3 72988479 72990671 Vivi7g02982 7 94496969 94499188 ECH
Vivi3g04162 3 72988479 72990671 Vivi3g04162 3 72988479 72990671 ECH
Vivi3g04162 3 72988479 72990671 Vivi1g05553 1 121977062 121981370 PCT