Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04158 ATGAGTTTTGTTTTTCGAGGTGCAAGAGGTGATATAGAAAATGGGTTTCCAGGATTTATACCCGAGAGGCGTGCATTGCGTGTTCATGCAGCACGACCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTGCTTGGTGTTTTTTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCCCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGTCTTCTTGGCCACACAGAACTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACTGAAGAAGAGATAAACGCTCTTCCAGTTCACAAATACAAGGTTTCTGTTCCCCAAAAAAGTAGCTCCTCAATGCAACAAGCACCCCCATCCACTTCTGCTGAGCCAGTAGCCACCGAAACTTCACTCTTCTCATCGTTTCACTCTTCTCATCGTTCTCATCGTTTCACTCTTCTCATCGCTTCCGCCGCCAGCCACCGTTCAGCCACCACCAGCCACCGTTCTGCTTCCAGCCACCGTCCTCTCACGAACAATATGGCAGCATCTTCCTCAACACCAAATTCTTCTACGTCGGTTGCTTCGTGTGCTGCAATATTCAAACCAACCAATAGTAAAGACATAGGATGGAAATATAATGGTTTGAAGGATTTGAATAATCGGAAGAAGGTCACATGTGATTTCTGTAACATGACAAGTAGTGGAGGAATAAGTAGAGCAAAAAGGCATCAAGCAGGAATTCAAGGCGATGTAATTCCTTGTTTGAAAACACCGGAGGATGTTAAGGCTATATTACGTGCCGACATTTTTGAGAAAGAGAAAATTAAGAAAGGAATACAAGAAATTGCGGTGCAAATAGATGCGGATGATACCCTTGATATCGAGGAAATAAGTAGGATTAGAACCGGAAAGAGGATTGCCGAGAATGAGACCTCTTCAATAGCCATCAAGAGGACTAAAGGGCCATTAGATTTGGTGTATAAGAAGGCTAAGGACACAAGTATCAATGATGCTTGTGATAAAGAAGCGAGGGCAAGAACTATCCAATATGTTGCTCGCTTTTTTTATACGTGTGGAGTTGCTTTTAATGTAGCAAATGCAAGAGCTTTTAAGTTGATGTTGGAAGCCGTTGGGAGCTATGGTCCTCATTTGAAGCCGCCAAGTTATCATGAACTTAGGGTTCCACTTCTTAAAAATGAGTTGGAATATACGAAAGGTTTGTTGAAGAACCAAGAGGTGCAAAGAAACAAATACGGTTGTTCAATTATGTCGGATGGTTGGACGGATAGAAAAGGTAGAACATTGATCAATTTCTTGGTCAATTGCTCGACGGGGACCATGTTTGTGAAGAGTGTGGATGCTTCCGACTATGCAAAGACGGGTGAAAAGCTAGCCGAGTTGTTGGACACATTTGTTGAGGAAATGGGTGAAAAAAATGTTGTCCAATTGATCACCGATAATGGAAGCAACTATGTAGCGGCGGGTAAAATATTGTGTGAAGGGAGGAAACACTTGTTTTGGACTCCATGTGCTGCCCATTGTATAGACCTTATGTTAGAAGACATAGGCAAAATTCCAAAGGTGAAAAATGTTATACAAAAAGGGATTAAGGTTGTGGGCTACATTTATAACCATACTTTTGCTTTGAATTTAATGAGAAAGACTACCGGCAATGTTGAATTGGTTAAACAAGGAGTGACAAGGTTTGCTACCCATTTCCTTTGTCTACAAAGAATGCAAGAACTAAGAGGAAAGCTTAGAGAGATGTTCCTTTGTGAAGAATGGACAAGTTCCAAGTGTGCCAAAGATCCTAAAGGAAAAAGGGCAGCTACTACTATTCTTAATGTATCATTTTGGAGTGATGTTCTCTACACTCTTAAGTGCATGGCGCCTCTTGTAGATGTGTTAAGAATGGTTGACAATGAAAGGAAACCCGCAATGGGATACATATATGCCGCAATGGGGGTAGCGAAGGAATCGATTGAAAAAGCTTTCAATTTAAATTCAAGCAAGTATAAAGATGTTTTTGAAATCATTGATAAAAGATGGGAGTGTCAACTTCATCATCCGCTACATGCTGCAGGCCACTATCTCAATCCTGAATATTATTTTTCTAAACCAGAAATTGAGTCCGATGCTAGATTGGTAAAAGGCCTCCGTAGGTGCATTGAGAGACTTAGTGAAAGTGAAGATGTGGAGGATTTGATTTCAGTAGAATTGGCACAATATCGGAGTGCTTCAGGTCTCTTTGGTATAAAAGCGGCAATGAGACAAAGGTCGACATTAGCTCCAGCTGAGTGGTGGAAGTCTTATGGAGCCGAAACTCCGCATTTGCAATTGTTGGCTATTAAAGTGTTGAGTTTGGGTTGCAGTGCTTCCGGATGTGAGCGTAACTGGAGCATCTTTGAGCATATTCATTCCAAGAAGAGAAATAAATTGGAACATCAAAAATTGCAAGACTTGGTGTTTATCAAGTATAATCAAGCTTTGGTAGAGAGGTTTGAAATTCGAGATAAAATTGATCCTATGGAATTTAGCGAAATTAATTTCCACACCGAATGGTTGGTGGGAGAGATGGAAAAGGTAGGAGATGTTGGTGAAGAATTGGTTGATCCAAATCATGATTTAACTTGGACTCAAGTTGCCGATGCTAGTGGGGCTAATGAGCCTTTAATCTACACTAGGAGGTCAATGGCACGCCCACAAACATCAAGGCCACCAAGAGCAACAATTGCACCAAGAGCAACAATTGCACCAAGAGCAACAATTGCACAACAAGTGGTGGTAGAAGAGGTTGAAGAAGATGTTGAAGATGAAGAATCGGAGGAAGATGTTGAAGAAGATGAAGAATTGGAGGAAAATGTTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGATGTTGAGGAATATTTTGATGATGCTACATGA 3123 0.4166 MSFVFRGARGDIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSVPQKSSSSMQQAPPSTSAEPVATETSLFSSFHSSHRSHRFTLLIASAASHRSATTSHRSASSHRPLTNNMAASSSTPNSSTSVASCAAIFKPTNSKDIGWKYNGLKDLNNRKKVTCDFCNMTSSGGISRAKRHQAGIQGDVIPCLKTPEDVKAILRADIFEKEKIKKGIQEIAVQIDADDTLDIEEISRIRTGKRIAENETSSIAIKRTKGPLDLVYKKAKDTSINDACDKEARARTIQYVARFFYTCGVAFNVANARAFKLMLEAVGSYGPHLKPPSYHELRVPLLKNELEYTKGLLKNQEVQRNKYGCSIMSDGWTDRKGRTLINFLVNCSTGTMFVKSVDASDYAKTGEKLAELLDTFVEEMGEKNVVQLITDNGSNYVAAGKILCEGRKHLFWTPCAAHCIDLMLEDIGKIPKVKNVIQKGIKVVGYIYNHTFALNLMRKTTGNVELVKQGVTRFATHFLCLQRMQELRGKLREMFLCEEWTSSKCAKDPKGKRAATTILNVSFWSDVLYTLKCMAPLVDVLRMVDNERKPAMGYIYAAMGVAKESIEKAFNLNSSKYKDVFEIIDKRWECQLHHPLHAAGHYLNPEYYFSKPEIESDARLVKGLRRCIERLSESEDVEDLISVELAQYRSASGLFGIKAAMRQRSTLAPAEWWKSYGAETPHLQLLAIKVLSLGCSASGCERNWSIFEHIHSKKRNKLEHQKLQDLVFIKYNQALVERFEIRDKIDPMEFSEINFHTEWLVGEMEKVGDVGEELVDPNHDLTWTQVADASGANEPLIYTRRSMARPQTSRPPRATIAPRATIAPRATIAQQVVVEEVEEDVEDEESEEDVEEDEELEENVEEEEEEEEDEDEDVEEYFDDAT 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04158 1040 PANTHER OSJNBA0013A04.12 PROTEIN 283 893 - -
Vivi3g04158 1040 MobiDBLite consensus disorder prediction 224 254 - -
Vivi3g04158 1040 Coils Coil 992 1038 - -
Vivi3g04158 1040 SUPERFAMILY Ribonuclease H-like 481 893 IPR012337 -
Vivi3g04158 1040 MobiDBLite consensus disorder prediction 175 194 - -
Vivi3g04158 1040 MobiDBLite consensus disorder prediction 993 1040 - -
Vivi3g04158 1040 Pfam Protein of unknown function (DUF 659) 450 598 IPR007021 -
Vivi3g04158 1040 MobiDBLite consensus disorder prediction 990 1040 - -
Vivi3g04158 1040 Pfam hAT family C-terminal dimerisation region 803 890 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04158 Vivi-Chr3 72949677 72956489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04158 1 192 C3H Transcription Factor Family AT3G55530 82.902 6.84e-93 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04158 - - vvo:131661867 1881.69