Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04156 ATGAGTTTTGTTTTTCGAGGTGCAAGAGGTGATATAGAAAATGGGTTTCCAGGATTTATACCCGAGAGGCGTGCATTGCGTGTTCATGCAGCACGACCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTGCTTGGTGTTTTTTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCCCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGTCTTCTTGGCCACACAGAACTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACTGAAGAAGAGATAAACGCTCTTCCAGTTCACAAATACAAGGTTTCTGTTCCCCAAAAAAGTAGCTCCTCAATGCAACAAGCACCCCCATCCACTTCTGCTGAGAAAACACAGGATAATTCAAATTTGGTTGGAAACACCAAAGTCTCAGATGATGATCTCACCTGCAGTGTATGCTTGGAGCAGGTTAATGTTGGAGATCTACTTCGTAGCTTGCCCTGCCTTCATCAGTTTCATGCTAATTGCATTGATCCTTGGTTGCGGCAACAAGGGACGTGCCCTGTTTGCAAATTTCGAGCAGGATCTGGGTGGAATGACGGTGGACATAATGATATCGCTGACATGGTTTGA 822 0.455 MSFVFRGARGDIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSVPQKSSSSMQQAPPSTSAEKTQDNSNLVGNTKVSDDDLTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDGGHNDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04156 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Vivi3g04156 273 SMART ring_2 213 253 IPR001841 -
Vivi3g04156 273 Pfam Ring finger domain 212 254 IPR001841 -
Vivi3g04156 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vivi3g04156 273 CDD RING-H2_PA-TM-RING 212 254 - -
Vivi3g04156 273 MobiDBLite consensus disorder prediction 173 203 - -
Vivi3g04156 273 SUPERFAMILY RING/U-box 206 257 - -
Vivi3g04156 273 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04156 Vivi-Chr3 72947970 72956489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04156 1 273 C3H Transcription Factor Family AT3G55530 77.536 1.87e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04156 K16283 - gmx:100777936 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04156 3 72947970 72956489 Vivi3g04156 3 72947970 72956489 ECH