Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04152 ATGGAAGTTGGTGATACTGAAATAGGTTTATCCTCCCCAGCACAAGACATCAATAATCTAGAAAATTCAATAAGAGAATGGAATCCTACGTGTGATGATGAGTTCAAGCCTGCAATTGGAAAAGTATTTGATACATTAGAAGAAGGAGGGAACTTTTATAAAAGGTATGCACATTGTGTTGGTTTTAGTGTGCGTAATTCATCTGAAACAAAAGATAAAGATGGTGTTAAATGGAAGTATTTTCTTTGCTCAAAAGAGGGTTTCAAAGTAGAAAAAATGGTTTTCTCGCCTGAATTGATTGTCAGTGAAAATAGTTTGCCTAAAACTAGAAAAAGAAAAATGACAAGGGAGGGGTGTAATGCAAGGATTGCTTTCAAGAGAACAATAGATGGTAGATATGAAGTTGCAAAATTTTTCGAAGGTCATACACATGCTTTAGTCACACCTAGGAAGAAACAATTTCTGAGATCAACTAGGAGTGTAAGCAATGTTCATAAGAACTTATTGTTTTCATGTAATAGAGCAAATGTGGGGACTTCAAAAGTATATCAATTACTAAAAGAACAAGTCGGGAGTTATGACAATATAGGATGCACTAAAAGAGATATCCAAAATTATTCTAGGAATTTGAAAGAGTTGATCAAAGACTCTGATGCTCATATTTTTATTGATAATTTTAGAAGAAAAAAAGAGACTAGCCATTCATTTTACTATGATTTTGAGGTTGATAAAGAAGGAAGGTTGAAATATGTATTTTGGGCTGATGGTATTTCTCGAAAAAATTACTCTTTATTTGGAGATGTTATTTCATTTGACACGACTTACAATACAAATAAGTATCATATGATTTTTGCCCCATTTACGGGTGTAAATCATCATCGACAAAGTATAACCTTTGGGGCTGCTCTTTTAGCTGATGAAAAAGTTGATTCATTTGTTTGGTTGTTTGAATCATTTTTAAAAGCAATGGGAGGTCACAAACCTATAGTTGTTATAACTGATCAAGATCCTGCTATGAAGATTGCTATAGAAAAAGTTTTTACTGGTTCTTCACATAGATTTTGCATGTGGCATATATTGAAAAAACTTTCAGAAAAGGTGGGTGCTTCCTTAAATGGTAATGTTGATTTTAATAGTCGTTTCATGTCGTGTGTTTGGAATTCAGATTCTTCAAAAGAATTTGAATCAAGATGGAAGACTATTATTAATGAATTTGGATTAGAGGAAAATGGTTGGCTATGTCAAATGTACGATATTCGCAATATGTGGATACCGGCCTATTTTAATGATATTTTTTTGGGTGGAATTTTGAGAACGACGTCAAGATCTGAAAGTGAAAATTCTTTTTTTGGTAACTATTTAAATAAAAACCTTAGTTTGGTTGAATTTTGGATTCGTTATGATTCTGCAATAGATTCACAAAGATATAAAGAGCTTCTGGCGGATAATGATACACTTCATTCTATTCCGGAGTTGAAGTTGCATATGGATTTAGAAAAGCATGGTAGAGAAATTTATACTCATGAAAATTTTTACATATTTCAAAAGGAACTGTGGAGTGCGTGTGTGGATTGTGGGATTGAAGGAACAAAAGAGAAAAGTGACAGATTTGTATTCTACATACTTGACAATAATATGGTCAATAACAACAAAGTGAGTAAACATAGAAAAGTGATTTGTCATTTTTCTGATGACATTGCACGTTGTTCATGTAAAATGTTTGAATCTGAAGGTATGCCATGTCGACATATCCTTTTTGTATTAAAGGGGAAAGGATTAAATGAGATTCCTAGTGGTTACATTGTTAATAGATGGACGAAATTGGCAACTAGTAAACCAATCTTCGATTGTGATGGAAATGTATTAGAGGGATGTTCTAGAACTGGAAGTGAGAGTAAGTTGGTTTCAGATGCATGGGCACAGTTATTTAAATGTATGCATGTTGCTGGCAGATGTAAAGACAAGCTAAATTTCATAATAAATGAAGGTTCTATGATGGAATTGAAATTGGCTAATATGAACAATGAGCTTATTTCAACAACTATAGATGAAGTAGAGGCTTTTATTGGTTCCAATGTCCCTAAGGAAATTCAAGTTCTTCCCCCTGAACCTTCAAATACTAAAGGGTGTGGAAAACGAATTAAAGGCGGAAAAGAGATGGCAATGGAACAACAACAAAAGAAAACAAGACTTTGTAGAGTTTGTAAGCAATATGCATACCATGACAGTAGAAATTGTCCCACAAAAATCTCTTCCTAA 2259 0.3324 MEVGDTEIGLSSPAQDINNLENSIREWNPTCDDEFKPAIGKVFDTLEEGGNFYKRYAHCVGFSVRNSSETKDKDGVKWKYFLCSKEGFKVEKMVFSPELIVSENSLPKTRKRKMTREGCNARIAFKRTIDGRYEVAKFFEGHTHALVTPRKKQFLRSTRSVSNVHKNLLFSCNRANVGTSKVYQLLKEQVGSYDNIGCTKRDIQNYSRNLKELIKDSDAHIFIDNFRRKKETSHSFYYDFEVDKEGRLKYVFWADGISRKNYSLFGDVISFDTTYNTNKYHMIFAPFTGVNHHRQSITFGAALLADEKVDSFVWLFESFLKAMGGHKPIVVITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGASLNGNVDFNSRFMSCVWNSDSSKEFESRWKTIINEFGLEENGWLCQMYDIRNMWIPAYFNDIFLGGILRTTSRSESENSFFGNYLNKNLSLVEFWIRYDSAIDSQRYKELLADNDTLHSIPELKLHMDLEKHGREIYTHENFYIFQKELWSACVDCGIEGTKEKSDRFVFYILDNNMVNNNKVSKHRKVICHFSDDIARCSCKMFESEGMPCRHILFVLKGKGLNEIPSGYIVNRWTKLATSKPIFDCDGNVLEGCSRTGSESKLVSDAWAQLFKCMHVAGRCKDKLNFIINEGSMMELKLANMNNELISTTIDEVEAFIGSNVPKEIQVLPPEPSNTKGCGKRIKGGKEMAMEQQQKKTRLCRVCKQYAYHDSRNCPTKISS 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04152 752 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 631 IPR031052 GO:0006355
Vivi3g04152 752 ProSiteProfiles Zinc finger SWIM-type profile. 556 592 IPR007527 GO:0008270
Vivi3g04152 752 Pfam FAR1 DNA-binding domain 51 147 IPR004330 -
Vivi3g04152 752 Pfam SWIM zinc finger 566 588 IPR007527 GO:0008270
Vivi3g04152 752 Coils Coil 196 216 - -
Vivi3g04152 752 Pfam MULE transposase domain 268 362 IPR018289 -
Vivi3g04152 752 SMART 26again6 567 594 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04152 Vivi-Chr3 72863305 72865563 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g04152 FAR1 1.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04152 - - mtr:112420857 910.983