Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04146 ATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCTTTTGGTGTTGATGCTTCATTCAGCTATAAGTATAACCAACAACGAAGGGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTTGCTACAACCCATGTGATTCCGTTTGTTGACGGGGAGCCAATTTATAAAGGAAGCTGTCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACCGGACTATGTTTCTGAAGCTCGATTGTTTCAGAAAGGAGCGAAGGAGGCTGAAGAAAAAACCAAAATGTGGCAGCTCCCATGGGTGCCACCACCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGTTGCGGGAAATGGCTGAGGCAAAGAGGTCATCAAAAATAAATGAGCTGGAAAACGAATTACGTGGTTTGGAATTTCTTTTGAATCAACTTGGACATGTTCAAGAGAGTGATGTACCATCATTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAATAAAAATATGCAATCCTTACGGAAAGCAAAAGGTGAACAAAAGAGCGAACAAGATGAATTTGAAAAAACTGACCCTAATGAGAAGTATACTCTTATAAACGTCCCTGATGACATGCTGACCGCAGATCAGCTTTTGGAAAAGAGGAAACAGTTGTCAATCAAATCTATGTCTGATGGGAGGCAGCGATTAAAACTGAAGCGCCAAGAAGAGGAGCTGGAAAGAGGAAGGAAACAACAGCTAGAGGAGGAGAGACGCTTGGCAAATCCAGAGCTTTACGTGGAACAATTGCGTGCCAGTTACAACGACCTTTCAGAGAAACTTAATCAACGTAAACGGCTCAAGACAAATGGAGGTTCCTCCACAAATGGAAATGGTTTGGCAGGTAGCGTTGGCCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTGCTGACAACTGCTGCCTTTGATCGTGGAAAAGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAGTTGATGAGCAAAGATAATGACGACGACGATGAGGAACCAGATGAGGATAGCGTAGAGCTAGCCCGCATCTCTTCGAGGCTCCAGGAGTTGGATCCAACATTTGCGCCCAAGGTAGAGACAAGTAGCTCCCAACCTGCCGAGGTGCCACGTGTCCGTCCACTCACAAAAGAAGATTTTCAGATTGTTTTCGGGATTGAAAGGTTCAGGTGTCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAAGTTGGATTAGATGAGATGGCTGGGGTCTCAATGAGAAGGTTATCATGTAACGACGAAAGACTTGAAGAGAGAATGACTAATTCCATACTTGTGACAGGTGGAAGTTCTCTTTTCCCCGGCATCGTTGAGCGCCTTGAAGCTGGAATTCGGATGATCAGACCCTGTGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCATCTGCTTATGCATCAACCCCAGGTTTCCGCACACAAACATTCACTAGGAAGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTTAAATATTCATTGTGA 1764 0.4354 MAELLFETYGVPSIAFGVDASFSYKYNQQRRVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYVAPDYVSEARLFQKGAKEAEEKTKMWQLPWVPPPVEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHVQESDVPSFLAETGYVSRQEVESARNKNMQSLRKAKGEQKSEQDEFEKTDPNEKYTLINVPDDMLTADQLLEKRKQLSIKSMSDGRQRLKLKRQEEELERGRKQQLEEERRLANPELYVEQLRASYNDLSEKLNQRKRLKTNGGSSTNGNGLAGSVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDSVELARISSRLQELDPTFAPKVETSSSQPAEVPRVRPLTKEDFQIVFGIERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCNDERLEERMTNSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASTPGFRTQTFTRKDYYEKGEDWLRNYQLKYSL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04146 587 Gene3D - 1 16 - -
Vivi3g04146 587 SUPERFAMILY Actin-like ATPase domain 36 580 IPR043129 -
Vivi3g04146 587 Gene3D Actin; Chain A, domain 4 382 476 - -
Vivi3g04146 587 MobiDBLite consensus disorder prediction 272 302 - -
Vivi3g04146 587 SMART actin_3 28 584 IPR004000 -
Vivi3g04146 587 Coils Coil 175 195 - -
Vivi3g04146 587 Gene3D Actin; Chain A, domain 4 73 126 - -
Vivi3g04146 587 Gene3D - 18 72 - -
Vivi3g04146 587 FunFam Putative actin-related protein 5 547 575 - -
Vivi3g04146 587 MobiDBLite consensus disorder prediction 333 347 - -
Vivi3g04146 587 PANTHER ACTIN 1 575 IPR004000 -
Vivi3g04146 587 MobiDBLite consensus disorder prediction 331 351 - -
Vivi3g04146 587 FunFam actin-related protein 5 18 72 - -
Vivi3g04146 587 FunFam Actin-related protein 5 69 123 - -
Vivi3g04146 587 Pfam Actin 1 134 IPR004000 -
Vivi3g04146 587 Pfam Actin 452 579 IPR004000 -
Vivi3g04146 587 Coils Coil 282 305 - -
Vivi3g04146 587 MobiDBLite consensus disorder prediction 215 246 - -
Vivi3g04146 587 Coils Coil 313 333 - -
Vivi3g04146 587 Gene3D - 547 575 - -
Vivi3g04146 587 MobiDBLite consensus disorder prediction 221 246 - -
Vivi3g04146 587 FunFam ARP5 actin-related protein 5 homolog 477 546 - -
Vivi3g04146 587 Gene3D - 477 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04146 Vivi-Chr3 72769432 72774988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04146 453 574 Cytoskeleton Gene Families AT5G09810 34.426 1.55e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04146 K11672 - gmx:100808396 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04146 3 72769432 72774988 Vivi3g04146 3 72769432 72774988 ECH