Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04139 ATGTTGATGGGTTGTTGCTTTAGTGCAAAGGTCAAAGCTGAGAGTCCTACTCCTACACATAATGGTTTGAATTCAAAGGTTGTTGGGAAAGAAGAGGATGTTTTGAGTGGTTTAAGCAGGAGGGCCTCTTCATCTTCACACATGCTTCTAACTTCTAGAACTGAGGGTGAGATATTAGAATGCATCAATTTGAAGTGTTTCACAATCAATGAGGTAAGAACCGCGACAAGGAACTTTCGTCCGGATAGTATGGTGGGTGAAGGTGGATTTGGTTGTGTGTTTAAAGGTTGGATCGACGAACATACTCTTGCTCCGACTAAACCAGGTACTGGTTTTGTCATTGCGGTGAAGAGGCTTAACCAAGAAAGCAGTCAGGGACATAGTGAATGGTTGACAGAGATCAACTATCTCGGACAGCTGCGTCATCCTAATCTTGTGAAACTAATTGGTTACTGCTTAGAGGATGATTACCAGATTTTGGTATATGAATTTGTAACCAAGGGAAGTTTGGATAACCATTTGTTTAGAAGGGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGGATGAAGATAGCTCTTGATGCTGCTAAAGGTCTTGCATTTCTTCATAGTGATGAAGTCGATGTGATATATCGAGACTTCAAAACTTCGAATATCTTGATTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGATGGTAAAAGATGGGCCCGAAGGCGGTAAAAGCCACGTATCGACAAGGATAATGGGCACCCCAGGTTATGCAGCTCCCGAGTACCTAGCTACAGGTCACCTAACCAAAAAGAGTGACGTATACAGTTTCGGAGTTGTTCTCTTGGAGATTATGTCAGGCAAGCGCACATTGGATACAAACCGGCCCTCTGGGGAGCATAATTTAGTCGAGTGGGCCAAACCATTACTCGTGAGCAAACGCAAGATCTCTCAAGTCATGGATGCTCGTATAGAAGGCCAGTACTCGTTACGTGAAGCAGTGAAAGTGGCTCACATTGCCATTCTATGCTTGTCGGCAGAACAAAAATATAGACCAAACATTGACGAGGTTGTGAGATCGTTGGAACAACTTCAGGATTCTAATGACAAAACAGATGGCCATAGCTCAAGTAGCAGTGGCTTAAAACAACATGGAAAAAGAGTCAATGAATCTTTAAGCGGAGAAGGTACTTCTAATCTAAGTTCATCATCACCTTCTCCTCTTCACAAGTAA 1233 0.425 MLMGCCFSAKVKAESPTPTHNGLNSKVVGKEEDVLSGLSRRASSSSHMLLTSRTEGEILECINLKCFTINEVRTATRNFRPDSMVGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLNQESSQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDDYQILVYEFVTKGSLDNHLFRRASYFQPLSWKIRMKIALDAAKGLAFLHSDEVDVIYRDFKTSNILIDSNYNAKLSDFGMVKDGPEGGKSHVSTRIMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRTLDTNRPSGEHNLVEWAKPLLVSKRKISQVMDARIEGQYSLREAVKVAHIAILCLSAEQKYRPNIDEVVRSLEQLQDSNDKTDGHSSSSSGLKQHGKRVNESLSGEGTSNLSSSSPSPLHK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04139 410 FunFam Serine/threonine-protein kinase BIK1 45 164 - -
Vivi3g04139 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vivi3g04139 410 Pfam Protein tyrosine and serine/threonine kinase 83 361 IPR001245 GO:0004672|GO:0006468
Vivi3g04139 410 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
Vivi3g04139 410 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Vivi3g04139 410 MobiDBLite consensus disorder prediction 365 410 - -
Vivi3g04139 410 ProSiteProfiles Protein kinase domain profile. 79 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04139 410 PANTHER OS01G0588500 PROTEIN-RELATED 46 365 - -
Vivi3g04139 410 MobiDBLite consensus disorder prediction 370 410 - -
Vivi3g04139 410 FunFam Serine/threonine-protein kinase PBS1 165 379 - -
Vivi3g04139 410 ProSitePatterns Protein kinases ATP-binding region signature. 85 117 IPR017441 GO:0005524
Vivi3g04139 410 Gene3D Transferase(Phosphotransferase) domain 1 165 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04139 Vivi-Chr3 72527110 72529628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04139 3 361 Glycoside Hydrolase AT3G07070 41.370 3.11e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g04139 PK_Tyr_Ser-Thr 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04139 - - var:108326804 587.03