Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04138 ATGGGACAACTGAGTCATCCTAATCTTGCGAAACTTATTGGTTATTGCTTAGAGGATATCCACCCCATTTTGGTATACGATTTTTCGCCCGAGGGAAGTTTGGACAATCATTTGTATAAAAGATCTTCTAATGTTCAGCCGCTATCATGGAAAAGCCGCATGAAGATAGCTCTTGATGCTGCTACGGCTCTTGCATATCTTCACGGTGATGAAGTCAACGTGATACATGGAGAATTAAATACTTCTAATATCTTAATAGATTCAAATCACAATGCAAAGATATTCGATTTCGGATTGAATAAAAATGAAAGGTTTAGGAGGTGCCAAGATTTTGCAGTAATTTACGCAGCACCTGAGTACATAATGACAGGTTATCAAACCAAAATGGGTGATGTATACAGTTTTGGACTTGTTCTGTTGGAAATTATGTCTGGCAAATGTGTATTTGATAGAAATAGGCCACGAAATGAACGTAATTTAATCGAATGGGCCAAGCCGTTACTCTTGAACAAATGCAAGATATTCAAAGTCATGGATTGCTATATAGAAGGGCGAGTATTCAAAGTCATGGATTGCTATATAGAAGGGCAATACTCGCCGCGTGAAGCAATGAGAGTAGCTTGCATTGTAATTTGTTGTCTGTCAAAAACACCAAAAAATAGACCAAACATGGATGAGGTGGTGACAGCATTGGAACAGCTTCAGGATTCTGATGACACAATTGGAACAGCTTCTCCACTTTGTGGAAATTGA 753 0.3851 MGQLSHPNLAKLIGYCLEDIHPILVYDFSPEGSLDNHLYKRSSNVQPLSWKSRMKIALDAATALAYLHGDEVNVIHGELNTSNILIDSNHNAKIFDFGLNKNERFRRCQDFAVIYAAPEYIMTGYQTKMGDVYSFGLVLLEIMSGKCVFDRNRPRNERNLIEWAKPLLLNKCKIFKVMDCYIEGRVFKVMDCYIEGQYSPREAMRVACIVICCLSKTPKNRPNMDEVVTALEQLQDSDDTIGTASPLCGN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04138 250 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Vivi3g04138 250 Gene3D Transferase(Phosphotransferase) domain 1 30 244 - -
Vivi3g04138 250 PANTHER OS01G0588500 PROTEIN-RELATED 1 235 - -
Vivi3g04138 250 SUPERFAMILY Protein kinase-like (PK-like) 1 238 IPR011009 -
Vivi3g04138 250 PIRSF ILK 197 241 - -
Vivi3g04138 250 PIRSF ILK 1 176 - -
Vivi3g04138 250 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04138 250 Pfam Protein tyrosine and serine/threonine kinase 1 231 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04138 Vivi-Chr3 72516796 72517872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04138 1 231 Receptor kinase-like Gene Family AT3G58690 40.244 1.14e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g04138 PK_Tyr_Ser-Thr 2.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04138 - - vvo:131658319 517.694