Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04119 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAAAAAGGTCCTTGGACAGCTGAAGAAGATAAAAAGCTCATCAATTTCATCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGTTAGCAGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGATGGACAAATTACTTAAGGCCTGACCTAAAAAGAGGACTTTTATCAGAATATGAGGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCAAAAATTGCTTCTCATTTACCTGGAAGAACTGATAATGAGATTAAGAATCATTGGAATACACACATTAAGAAAAAGCTTAAGAAAATGGGAATTGATCCCGTTACACACAAGGTATTATTCACTATTGAAGAACAACCTCAACAACATCAAAAAGAATCTTCCCCTATTGAAGAACATGACACAAACGTTGTTGAATCCGAGAATGACAAAAACAAAGAACCACAAAAGCCAGAAACTTCATTTGATTCATCAACCATTACTGAAGAACAAGACCAAATTATGACACCACTTTTTGACTCATTGGAACTAATAAACGAGTTCTTAACAGAAGATGTTCCAATAGTAAAACCAGATGAAATTATAGTTCCATGTGTCCCTTCATCTTCTTCAACTACAACTATAACTACTACAACATCATCATCTTCTTCTTCAAATTCATCTAACTTTCTTGAAGACTTGCTACTACCTGATTTTGATTGGTCACATGATAATAATAATAATATTGAAAATAGTGATAATTATAATAGTGATATTAATATGGCATTATGGGATGATGACTTTATTAGTAATTGGGATTTTGTGATTAATGATGATGATAATGGTGACAGAAAGCAAGTATTTGATGCTCCTCAAAATCAGTATCCAAGAGTGGTCATGGATTCAGAATCATGGGCCTATGGATTGTTTTGA 960 0.3438 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKVLFTIEEQPQQHQKESSPIEEHDTNVVESENDKNKEPQKPETSFDSSTITEEQDQIMTPLFDSLELINEFLTEDVPIVKPDEIIVPCVPSSSSTTTITTTTSSSSSSNSSNFLEDLLLPDFDWSHDNNNNIENSDNYNSDINMALWDDDFISNWDFVINDDDNGDRKQVFDAPQNQYPRVVMDSESWAYGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04119 319 SMART sant 66 114 IPR001005 -
Vivi3g04119 319 SMART sant 13 63 IPR001005 -
Vivi3g04119 319 Gene3D - 70 166 - -
Vivi3g04119 319 CDD SANT 16 61 IPR001005 -
Vivi3g04119 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi3g04119 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi3g04119 319 MobiDBLite consensus disorder prediction 135 178 - -
Vivi3g04119 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi3g04119 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi3g04119 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi3g04119 319 FunFam Myb transcription factor 71 133 - -
Vivi3g04119 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 252 - -
Vivi3g04119 319 FunFam MYB transcription factor 11 67 - -
Vivi3g04119 319 CDD SANT 74 112 IPR001005 -
Vivi3g04119 319 MobiDBLite consensus disorder prediction 140 167 - -
Vivi3g04119 319 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vivi3g04119 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi3g04119 319 Gene3D - 11 67 - -
Vivi3g04119 319 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04119 Vivi-Chr3 72201793 72204087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04119 1 288 MYB Transcription Factor Family AT1G66230 56.357 1.29e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g04119 Myb_DNA-binding 9.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04119 K09422 - gmx:100803624 471.085