Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04118 ATGTCAGCACGATTTCTGTTGCCGCAACCTCACCGGAGCACGATTTCGCGAACCCTAGCGCCGTCGTCTTCTTCATCTTCACACTTCAACTCAGGAACTTTTGGGAAGACGCGGTCACTAACCTTTGCATCAAATTCGGTTGAAGTTGTTGATACTGGTGCGGCATTGCATTGCTGGTCATCTCCCTCCAATATCATCTCTCTTTTTCTCTCCCTATCCTCTTCTCACTCACCACCATTGTTGTTGCAACTCACCTCTTCTACTACGATTCTTATTGGTCCTTCTGATTGGGAGGATTATTCCAAAGGAAAAGAGGGATCTACAAGATACAGAATTCATAACCTGCCAGAGAATCCAGGTACCCATTTATCATCTAATCAAAGAGATTCTTTCTTTGACTTATTTCAGAGAAAGGAAAAGGGTGCAGATCCATCATTGACCGAGTTCTATTTTCGCACACATCGGAAAAAGGATCAAAGTTGGGTTGGAGTTCATGCTGAATCTGCATATGATAAATTTGAACAGAAAAAGTTGGAGATTTCTTCTCAGAATCCAACTATTCCAGGAGAGGACGAAGCTGATAGTCAACCAACTAATGAAATGCCACCGGATTTGGATATATGGGTAGAGTCGGTTGGAAAGAAGAAAGGGAATAGGGTATTTGGTCTTGGAACCGCATCTAAGACTTTGGTTTCTGTATCAAAGAAACCCTCAAGTCTTTCAAGTGACTCTCAAGAGGTTGATGTTTTGAGAAGTCAAGGCCATGCCTTAAATGCATCGTTGCAAAGACAAGAACAAGAAAAGATGGTGATGAGGCAACAATTGCATCGACAAGAAGAAAAGATGGCCGAAGCGAATAATAAAATTTCATTTTTAATGAATCATTTAGGATTTGTTGGGTCTTCTTCTCATCCACCACAACCCACTAATGAAAATGATCACACAAATGAAGATGTCGTCGATGAAACAGATGAAGAAGACCTTAGTAATGAATTTTGA 999 0.4104 MSARFLLPQPHRSTISRTLAPSSSSSSHFNSGTFGKTRSLTFASNSVEVVDTGAALHCWSSPSNIISLFLSLSSSHSPPLLLQLTSSTTILIGPSDWEDYSKGKEGSTRYRIHNLPENPGTHLSSNQRDSFFDLFQRKEKGADPSLTEFYFRTHRKKDQSWVGVHAESAYDKFEQKKLEISSQNPTIPGEDEADSQPTNEMPPDLDIWVESVGKKKGNRVFGLGTASKTLVSVSKKPSSLSSDSQEVDVLRSQGHALNASLQRQEQEKMVMRQQLHRQEEKMAEANNKISFLMNHLGFVGSSSHPPQPTNENDHTNEDVVDETDEEDLSNEF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04118 332 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 89 119 IPR038909 GO:0003677|GO:0006355
Vivi3g04118 332 Pfam Plant transposase (Ptta/En/Spm family) 128 226 IPR004252 -
Vivi3g04118 332 Coils Coil 261 295 - -
Vivi3g04118 332 Pfam GIY-YIG domain-containing protein 88 118 - -
Vivi3g04118 332 MobiDBLite consensus disorder prediction 317 332 - -
Vivi3g04118 332 MobiDBLite consensus disorder prediction 177 200 - -
Vivi3g04118 332 MobiDBLite consensus disorder prediction 179 193 - -
Vivi3g04118 332 MobiDBLite consensus disorder prediction 296 332 - -
Vivi3g04118 332 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04118 Vivi-Chr3 72167702 72177790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04118 90 122 HRT Transcription Factor Family AT5G56780 51.429 6.47e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04118 - - vvo:131606265 394.43